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P0AB98

- ATP6_ECOLI

UniProt

P0AB98 - ATP6_ECOLI

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Protein
ATP synthase subunit a
Gene
atpB, papD, uncB, b3738, JW3716
Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.UniRule annotation

GO - Molecular functioni

  1. proton-transporting ATP synthase activity, rotational mechanism Source: EcoCyc

GO - Biological processi

  1. plasma membrane ATP synthesis coupled proton transport Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

ATP synthesis, Hydrogen ion transport, Ion transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:ATPB-MONOMER.
ECOL316407:JW3716-MONOMER.
MetaCyc:ATPB-MONOMER.

Protein family/group databases

TCDBi3.A.2.1.1. the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit a
Alternative name(s):
ATP synthase F0 sector subunit a
F-ATPase subunit 6
Gene namesi
Name:atpB
Synonyms:papD, uncB
Ordered Locus Names:b3738, JW3716
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG10099. atpB.

Subcellular locationi

Cell inner membrane; Multi-pass membrane protein 1 Publication

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3939Periplasmic Inferred
Add
BLAST
Transmembranei40 – 6021Helical; Inferred
Add
BLAST
Topological domaini61 – 9939Cytoplasmic Inferred
Add
BLAST
Transmembranei100 – 12021Helical; Inferred
Add
BLAST
Topological domaini121 – 14525Periplasmic Inferred
Add
BLAST
Transmembranei146 – 16621Helical; Inferred
Add
BLAST
Topological domaini167 – 21953Cytoplasmic Inferred
Add
BLAST
Transmembranei220 – 24021Helical; Inferred
Add
BLAST
Topological domaini241 – 2411Periplasmic Inferred
Transmembranei242 – 26221Helical; Inferred
Add
BLAST
Topological domaini263 – 2719Cytoplasmic Inferred

GO - Cellular componenti

  1. integral component of membrane Source: EcoliWiki
  2. integral component of plasma membrane Source: EcoCyc
  3. proton-transporting ATP synthase complex, coupling factor F(o) Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, CF(0), Membrane

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi206 – 2061S → L: Reduced activity.
Mutagenesisi207 – 2071L → Y or F: No change in activity.
Mutagenesisi210 – 2101R → K, I, V or E: Completely defective.
Mutagenesisi214 – 2141N → H: Completely defective.
Mutagenesisi214 – 2141N → V: Reduced activity.
Mutagenesisi217 – 2171A → H: Reduced activity.
Mutagenesisi217 – 2171A → R: Completely defective.
Mutagenesisi245 – 2451H → Y: Reduced activity.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 271271ATP synthase subunit aUniRule annotation
PRO_0000082053Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP0AB98.

Interactioni

Subunit structurei

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a1, b2 and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF1 is attached to CF0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.

Protein-protein interaction databases

DIPiDIP-47956N.
IntActiP0AB98. 2 interactions.
MINTiMINT-1300501.
STRINGi511145.b3738.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi97 – 12529
Helixi135 – 16632
Helixi202 – 22827
Beta strandi229 – 2313
Helixi233 – 26331

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1C17NMR-M95-271[»]
ProteinModelPortaliP0AB98.

Miscellaneous databases

EvolutionaryTraceiP0AB98.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase A chain family.

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0356.
HOGENOMiHOG000253872.
KOiK02108.
OMAiSFWVLNI.
OrthoDBiEOG6K4054.
PhylomeDBiP0AB98.

Family and domain databases

Gene3Di1.20.120.220. 1 hit.
HAMAPiMF_01393. ATP_synth_a_bact.
InterProiIPR000568. ATPase_F0-cplx_asu.
IPR023011. ATPase_F0-cplx_asu_AS.
[Graphical view]
PANTHERiPTHR11410. PTHR11410. 1 hit.
PfamiPF00119. ATP-synt_A. 1 hit.
[Graphical view]
PRINTSiPR00123. ATPASEA.
SUPFAMiSSF81336. SSF81336. 1 hit.
TIGRFAMsiTIGR01131. ATP_synt_6_or_A. 1 hit.
PROSITEiPS00449. ATPASE_A. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AB98-1 [UniParc]FASTAAdd to Basket

« Hide

MASENMTPQD YIGHHLNNLQ LDLRTFSLVD PQNPPATFWT INIDSMFFSV    50
VLGLLFLVLF RSVAKKATSG VPGKFQTAIE LVIGFVNGSV KDMYHGKSKL 100
IAPLALTIFV WVFLMNLMDL LPIDLLPYIA EHVLGLPALR VVPSADVNVT 150
LSMALGVFIL ILFYSIKMKG IGGFTKELTL QPFNHWAFIP VNLILEGVSL 200
LSKPVSLGLR LFGNMYAGEL IFILIAGLLP WWSQWILNVP WAIFHILIIT 250
LQAFIFMVLT IVYLSMASEE H 271
Length:271
Mass (Da):30,303
Last modified:July 21, 1986 - v1
Checksum:i4933EAF09401566D
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti71 – 711V → M in CAA23521. 1 Publication
Sequence conflicti179 – 1824TLQP → RCST in CAA23590. 1 Publication
Sequence conflicti188 – 1881F → S in AAA24740. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
J01594 Genomic DNA. Translation: AAA24731.1.
X01631 Genomic DNA. Translation: CAA25776.1.
V00264 Genomic DNA. Translation: CAA23514.1.
V00266 Genomic DNA. Translation: CAA23520.1.
V00266 Genomic DNA. Translation: CAA23521.1.
V00310 Genomic DNA. Translation: CAA23590.1.
M25464 Genomic DNA. Translation: AAA83869.2.
M14019 Genomic DNA. Translation: AAA24740.1.
L10328 Genomic DNA. Translation: AAA62090.1.
U00096 Genomic DNA. Translation: AAC76761.1.
AP009048 Genomic DNA. Translation: BAE77550.1.
X01383 Genomic DNA. Translation: CAA25641.1.
M29174 Genomic DNA. Translation: AAA24423.1.
PIRiC93732. LWEC6.
RefSeqiNP_418194.1. NC_000913.3.
YP_491691.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC76761; AAC76761; b3738.
BAE77550; BAE77550; BAE77550.
GeneIDi12933606.
948252.
KEGGiecj:Y75_p3430.
eco:b3738.
PATRICi32122973. VBIEscCol129921_3862.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
J01594 Genomic DNA. Translation: AAA24731.1 .
X01631 Genomic DNA. Translation: CAA25776.1 .
V00264 Genomic DNA. Translation: CAA23514.1 .
V00266 Genomic DNA. Translation: CAA23520.1 .
V00266 Genomic DNA. Translation: CAA23521.1 .
V00310 Genomic DNA. Translation: CAA23590.1 .
M25464 Genomic DNA. Translation: AAA83869.2 .
M14019 Genomic DNA. Translation: AAA24740.1 .
L10328 Genomic DNA. Translation: AAA62090.1 .
U00096 Genomic DNA. Translation: AAC76761.1 .
AP009048 Genomic DNA. Translation: BAE77550.1 .
X01383 Genomic DNA. Translation: CAA25641.1 .
M29174 Genomic DNA. Translation: AAA24423.1 .
PIRi C93732. LWEC6.
RefSeqi NP_418194.1. NC_000913.3.
YP_491691.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1C17 NMR - M 95-271 [» ]
ProteinModelPortali P0AB98.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-47956N.
IntActi P0AB98. 2 interactions.
MINTi MINT-1300501.
STRINGi 511145.b3738.

Chemistry

ChEMBLi CHEMBL1075074.

Protein family/group databases

TCDBi 3.A.2.1.1. the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC76761 ; AAC76761 ; b3738 .
BAE77550 ; BAE77550 ; BAE77550 .
GeneIDi 12933606.
948252.
KEGGi ecj:Y75_p3430.
eco:b3738.
PATRICi 32122973. VBIEscCol129921_3862.

Organism-specific databases

EchoBASEi EB0097.
EcoGenei EG10099. atpB.

Phylogenomic databases

eggNOGi COG0356.
HOGENOMi HOG000253872.
KOi K02108.
OMAi SFWVLNI.
OrthoDBi EOG6K4054.
PhylomeDBi P0AB98.

Enzyme and pathway databases

BioCyci EcoCyc:ATPB-MONOMER.
ECOL316407:JW3716-MONOMER.
MetaCyc:ATPB-MONOMER.

Miscellaneous databases

EvolutionaryTracei P0AB98.
PROi P0AB98.

Gene expression databases

Genevestigatori P0AB98.

Family and domain databases

Gene3Di 1.20.120.220. 1 hit.
HAMAPi MF_01393. ATP_synth_a_bact.
InterProi IPR000568. ATPase_F0-cplx_asu.
IPR023011. ATPase_F0-cplx_asu_AS.
[Graphical view ]
PANTHERi PTHR11410. PTHR11410. 1 hit.
Pfami PF00119. ATP-synt_A. 1 hit.
[Graphical view ]
PRINTSi PR00123. ATPASEA.
SUPFAMi SSF81336. SSF81336. 1 hit.
TIGRFAMsi TIGR01131. ATP_synt_6_or_A. 1 hit.
PROSITEi PS00449. ATPASE_A. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "DNA sequence around the Escherichia coli unc operon. Completion of the sequence of a 17 kilobase segment containing asnA, oriC, unc, glmS and phoS."
    Walker J.E., Gay N.J., Saraste M., Eberle A.N.
    Biochem. J. 224:799-815(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The atp operon: nucleotide sequence of the promoter and the genes for the membrane proteins, and the delta subunit of Escherichia coli ATP-synthase."
    Gay N.J., Walker J.E.
    Nucleic Acids Res. 9:3919-3926(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli."
    Nielsen J., Hansen F.G., Hoppe J., Friedl P., von Meyenburg K.
    Mol. Gen. Genet. 184:33-39(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  4. "Nucleotide sequence of the genes for F0 components of the proton-translocating ATPase from Escherichia coli: prediction of the primary structure of F0 subunits."
    Kanazawa H., Mabuchi K., Kayano T., Noumi T., Sekiya T., Futai M.
    Biochem. Biophys. Res. Commun. 103:613-620(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  5. "Structure and function of H+-ATPase: what we have learned from Escherichia coli H+-ATPase."
    Kanazawa H., Futai M.
    Ann. N. Y. Acad. Sci. 402:45-64(1982) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  6. "Impaired proton conductivity resulting from mutations in the a subunit of F1F0 ATPase in Escherichia coli."
    Cai B.D., Simoni R.D.
    J. Biol. Chem. 261:10043-10050(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], MUTAGENESIS.
  7. "DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication."
    Burland V.D., Plunkett G. III, Daniels D.L., Blattner F.R.
    Genomics 16:551-561(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  8. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  9. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  10. "Overproduction of subunit a of the F0 component of proton-translocating ATPase inhibits growth of Escherichia coli cells."
    Kanazawa H., Kiyasu T., Noumi T., Futai M.
    J. Bacteriol. 158:300-306(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-92.
  11. "The promoters of the atp operon of Escherichia coli K12."
    Nielsen J., Joergensen B.B., von Meyenburg K., Hansen F.G.
    Mol. Gen. Genet. 193:64-71(1984) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-32.
    Strain: K12.
  12. "Genetic evidence for interaction between the a and b subunits of the F0 portion of the Escherichia coli proton translocating ATPase."
    Kumamoto C.A., Simoni R.D.
    J. Biol. Chem. 261:10037-10042(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 235-271.
  13. "Proton translocation by the F1F0ATPase of Escherichia coli. Mutagenic analysis of the a subunit."
    Cain B.D., Simoni R.D.
    J. Biol. Chem. 264:3292-3300(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: MUTAGENESIS.
  14. "Temperature-sensitive mutations at the carboxy terminus of the alpha subunit of the Escherichia coli F1F0 ATP synthase."
    Vik S.B., Lee D., Marshall P.A.
    J. Bacteriol. 173:4544-4548(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: MUTAGENESIS.
  15. "A topological analysis of subunit alpha from Escherichia coli F1F0-ATP synthase predicts eight transmembrane segments."
    Lewis M.L., Chang J.A., Simoni R.D.
    J. Biol. Chem. 265:10541-10550(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY.
  16. "The transmembrane topology of the a subunit from the ATPase in Escherichia coli analyzed by PhoA protein fusions."
    Bjorbaek C., Foersom V., Michelsen O.
    FEBS Lett. 260:31-34(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY.
  17. "Transmembrane topology of Escherichia coli H(+)-ATPase (ATP synthase) subunit a."
    Yamada H., Moriyama Y., Maeda M., Futai M.
    FEBS Lett. 390:34-38(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY.
  18. "Transmembrane topography of subunit a in the Escherichia coli F1F0 ATP synthase."
    Valiyaveetil F.I., Fillingame R.H.
    J. Biol. Chem. 273:16241-16247(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY.
  19. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION.
    Strain: K12 / MG1655 / ATCC 47076.
  20. "Structural changes linked to proton translocation by subunit c of the ATP synthase."
    Rastogi V.K., Girvin M.E.
    Nature 402:263-268(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR OF 95-271.

Entry informationi

Entry nameiATP6_ECOLI
AccessioniPrimary (citable) accession number: P0AB98
Secondary accession number(s): P00855
, Q2M856, Q47065, Q47708
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: July 9, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Was originally (1 Publication) proposed to be encoded from either Met-1 or Val-71 (PID CAA23521); it is now thought to start of Met-1.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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