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Protein

Protein YciN

Gene

yciN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12868-MONOMER.
ECOL316407:JW1265-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YciN
Gene namesi
Name:yciN
Ordered Locus Names:b1273, JW1265
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12868. yciN.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8383Protein YciNPRO_0000168880Add
BLAST

Proteomic databases

EPDiP0AB61.
PaxDbiP0AB61.
PRIDEiP0AB61.

Interactioni

Protein-protein interaction databases

BioGridi4259578. 4 interactions.
DIPiDIP-35851N.
IntActiP0AB61. 9 interactions.
STRINGi511145.b1273.

Structurei

3D structure databases

ProteinModelPortaliP0AB61.
SMRiP0AB61. Positions 2-82.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105RKX. Bacteria.
ENOG4111PJF. LUCA.
HOGENOMiHOG000274156.
InParanoidiP0AB61.
OMAiNTTAVFN.
OrthoDBiEOG6GBMFN.

Family and domain databases

InterProiIPR019633. DUF2498.
[Graphical view]
PfamiPF10692. DUF2498. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AB61-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKETQPIDR ETLLKEANKI IREHEDTLAG IEATGVTQRN GVLVFTGDYF
60 70 80
LDEQGLPTAK STAVFNMFKH LAHVLSEKYH LVD
Length:83
Mass (Da):9,386
Last modified:October 11, 2005 - v1
Checksum:i558ACD3DD8DFFCA4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti43 – 8341LVFTG…YHLVD → RYLPATTF (PubMed:3029379).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X04475 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74355.1.
AP009048 Genomic DNA. Translation: BAA14810.1.
PIRiD64875.
RefSeqiNP_415789.1. NC_000913.3.
WP_001031530.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74355; AAC74355; b1273.
BAA14810; BAA14810; BAA14810.
GeneIDi945860.
KEGGiecj:JW1265.
eco:b1273.
PATRICi32117804. VBIEscCol129921_1322.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X04475 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74355.1.
AP009048 Genomic DNA. Translation: BAA14810.1.
PIRiD64875.
RefSeqiNP_415789.1. NC_000913.3.
WP_001031530.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AB61.
SMRiP0AB61. Positions 2-82.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259578. 4 interactions.
DIPiDIP-35851N.
IntActiP0AB61. 9 interactions.
STRINGi511145.b1273.

Proteomic databases

EPDiP0AB61.
PaxDbiP0AB61.
PRIDEiP0AB61.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74355; AAC74355; b1273.
BAA14810; BAA14810; BAA14810.
GeneIDi945860.
KEGGiecj:JW1265.
eco:b1273.
PATRICi32117804. VBIEscCol129921_1322.

Organism-specific databases

EchoBASEiEB2709.
EcoGeneiEG12868. yciN.

Phylogenomic databases

eggNOGiENOG4105RKX. Bacteria.
ENOG4111PJF. LUCA.
HOGENOMiHOG000274156.
InParanoidiP0AB61.
OMAiNTTAVFN.
OrthoDBiEOG6GBMFN.

Enzyme and pathway databases

BioCyciEcoCyc:EG12868-MONOMER.
ECOL316407:JW1265-MONOMER.

Miscellaneous databases

PROiP0AB61.

Family and domain databases

InterProiIPR019633. DUF2498.
[Graphical view]
PfamiPF10692. DUF2498. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete nucleotide sequence of the topA gene encoding Escherichia coli DNA topoisomerase I."
    Tse-Dinh Y.-C., Wang J.C.
    J. Mol. Biol. 191:321-331(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Small genes/gene-products in Escherichia coli K-12."
    Wasinger V.C., Humphery-Smith I.
    FEMS Microbiol. Lett. 169:375-382(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-9.
    Strain: K12.
  6. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYCIN_ECOLI
AccessioniPrimary (citable) accession number: P0AB61
Secondary accession number(s): P46132, P77447
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 16, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.