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Protein

Protein YchN

Gene

ychN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12404-MONOMER.
ECOL316407:JW1210-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YchN
Gene namesi
Name:ychN
Ordered Locus Names:b1219, JW1210
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12404. ychN.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 117117Protein YchNPRO_0000168870Add
BLAST

Proteomic databases

EPDiP0AB52.
PaxDbiP0AB52.
PRIDEiP0AB52.

Interactioni

Subunit structurei

Homohexamer. The hexamer is formed by a dimer of trimers.1 Publication

Protein-protein interaction databases

BioGridi4261631. 135 interactions.
DIPiDIP-48042N.
IntActiP0AB52. 1 interaction.
MINTiMINT-1300414.
STRINGi511145.b1219.

Structurei

Secondary structure

1
117
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86Combined sources
Turni12 – 143Combined sources
Helixi17 – 3115Combined sources
Beta strandi36 – 416Combined sources
Helixi43 – 497Combined sources
Beta strandi56 – 583Combined sources
Helixi61 – 7010Combined sources
Beta strandi75 – 784Combined sources
Helixi79 – 846Combined sources
Beta strandi96 – 994Combined sources
Helixi101 – 1077Combined sources
Turni108 – 1103Combined sources
Beta strandi112 – 1165Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1JX7X-ray2.80A/B/C/D/E/F2-117[»]
ProteinModelPortaliP0AB52.
SMRiP0AB52. Positions 1-117.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AB52.

Family & Domainsi

Sequence similaritiesi

To M.jannaschii MJ0989.Curated

Phylogenomic databases

eggNOGiENOG41090EX. Bacteria.
COG1553. LUCA.
HOGENOMiHOG000229181.
InParanoidiP0AB52.
KOiK06039.
OMAiTDGRGIT.
PhylomeDBiP0AB52.

Family and domain databases

Gene3Di3.40.1260.10. 1 hit.
InterProiIPR027396. DsrEFH-like.
IPR003787. Sulphur_relay_DrsE/F-like.
[Graphical view]
PfamiPF02635. DrsE. 1 hit.
[Graphical view]
SUPFAMiSSF75169. SSF75169. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AB52-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKIVIVANG APYGSESLFN SLRLAIALRE QESNLDLRLF LMSDAVTAGL
60 70 80 90 100
RGQKPGEGYN IQQMLEILTA QNVPVKLCKT CTDGRGISTL PLIDGVEIGT
110
LVELAQWTLS ADKVLTF
Length:117
Mass (Da):12,693
Last modified:October 11, 2005 - v1
Checksum:i49D1E3550CFDEFAC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti8 – 81A → S (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L28709 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74303.1.
AP009048 Genomic DNA. Translation: BAA36087.1.
PIRiH64868.
RefSeqiNP_415737.1. NC_000913.3.
WP_001169669.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74303; AAC74303; b1219.
BAA36087; BAA36087; BAA36087.
GeneIDi945794.
KEGGiecj:JW1210.
eco:b1219.
PATRICi32117696. VBIEscCol129921_1270.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L28709 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74303.1.
AP009048 Genomic DNA. Translation: BAA36087.1.
PIRiH64868.
RefSeqiNP_415737.1. NC_000913.3.
WP_001169669.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1JX7X-ray2.80A/B/C/D/E/F2-117[»]
ProteinModelPortaliP0AB52.
SMRiP0AB52. Positions 1-117.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261631. 135 interactions.
DIPiDIP-48042N.
IntActiP0AB52. 1 interaction.
MINTiMINT-1300414.
STRINGi511145.b1219.

Proteomic databases

EPDiP0AB52.
PaxDbiP0AB52.
PRIDEiP0AB52.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74303; AAC74303; b1219.
BAA36087; BAA36087; BAA36087.
GeneIDi945794.
KEGGiecj:JW1210.
eco:b1219.
PATRICi32117696. VBIEscCol129921_1270.

Organism-specific databases

EchoBASEiEB2304.
EcoGeneiEG12404. ychN.

Phylogenomic databases

eggNOGiENOG41090EX. Bacteria.
COG1553. LUCA.
HOGENOMiHOG000229181.
InParanoidiP0AB52.
KOiK06039.
OMAiTDGRGIT.
PhylomeDBiP0AB52.

Enzyme and pathway databases

BioCyciEcoCyc:EG12404-MONOMER.
ECOL316407:JW1210-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0AB52.
PROiP0AB52.

Family and domain databases

Gene3Di3.40.1260.10. 1 hit.
InterProiIPR027396. DsrEFH-like.
IPR003787. Sulphur_relay_DrsE/F-like.
[Graphical view]
PfamiPF02635. DrsE. 1 hit.
[Graphical view]
SUPFAMiSSF75169. SSF75169. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCHN_ECOLI
AccessioniPrimary (citable) accession number: P0AB52
Secondary accession number(s): P39164, P76021
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: September 7, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.