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Protein

Protein YchN

Gene

ychN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12404-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YchN
Gene namesi
Name:ychN
Ordered Locus Names:b1219, JW1210
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12404 ychN

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001688701 – 117Protein YchNAdd BLAST117

Proteomic databases

EPDiP0AB52
PaxDbiP0AB52
PRIDEiP0AB52

Interactioni

Subunit structurei

Homohexamer. The hexamer is formed by a dimer of trimers.1 Publication

Protein-protein interaction databases

BioGridi4261631, 139 interactors
DIPiDIP-48042N
IntActiP0AB52, 1 interactor
STRINGi316385.ECDH10B_1278

Structurei

Secondary structure

1117
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 8Combined sources6
Turni12 – 14Combined sources3
Helixi17 – 31Combined sources15
Beta strandi36 – 41Combined sources6
Helixi43 – 49Combined sources7
Beta strandi56 – 58Combined sources3
Helixi61 – 70Combined sources10
Beta strandi75 – 78Combined sources4
Helixi79 – 84Combined sources6
Beta strandi96 – 99Combined sources4
Helixi101 – 107Combined sources7
Turni108 – 110Combined sources3
Beta strandi112 – 116Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1JX7X-ray2.80A/B/C/D/E/F2-117[»]
ProteinModelPortaliP0AB52
SMRiP0AB52
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AB52

Family & Domainsi

Sequence similaritiesi

To M.jannaschii MJ0989.Curated

Phylogenomic databases

eggNOGiENOG41090EX Bacteria
COG1553 LUCA
HOGENOMiHOG000229181
InParanoidiP0AB52
KOiK06039
OMAiVKACGPC
PhylomeDBiP0AB52

Family and domain databases

Gene3Di3.40.1260.10, 1 hit
InterProiView protein in InterPro
IPR027396 DsrEFH-like
IPR003787 Sulphur_relay_DrsE/F-like
PfamiView protein in Pfam
PF02635 DrsE, 1 hit
SUPFAMiSSF75169 SSF75169, 1 hit

Sequencei

Sequence statusi: Complete.

P0AB52-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKIVIVANG APYGSESLFN SLRLAIALRE QESNLDLRLF LMSDAVTAGL
60 70 80 90 100
RGQKPGEGYN IQQMLEILTA QNVPVKLCKT CTDGRGISTL PLIDGVEIGT
110
LVELAQWTLS ADKVLTF
Length:117
Mass (Da):12,693
Last modified:October 11, 2005 - v1
Checksum:i49D1E3550CFDEFAC
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti8A → S (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L28709 Genomic DNA No translation available.
U00096 Genomic DNA Translation: AAC74303.1
AP009048 Genomic DNA Translation: BAA36087.1
PIRiH64868
RefSeqiNP_415737.1, NC_000913.3
WP_001169669.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74303; AAC74303; b1219
BAA36087; BAA36087; BAA36087
GeneIDi945794
KEGGiecj:JW1210
eco:b1219
PATRICifig|511145.12.peg.1270

Similar proteinsi

Entry informationi

Entry nameiYCHN_ECOLI
AccessioniPrimary (citable) accession number: P0AB52
Secondary accession number(s): P39164, P76021
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 28, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
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Main funding by: National Institutes of Health