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Protein

Uncharacterized protein YmgD

Gene

ymgD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6611-MONOMER.
ECOL316407:JW5177-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmgD
Gene namesi
Name:ymgD
Ordered Locus Names:b1171, JW5177
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14292. ymgD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_000001382920 – 109Uncharacterized protein YmgDAdd BLAST90

Proteomic databases

PaxDbiP0AB46.
PRIDEiP0AB46.

Interactioni

Protein-protein interaction databases

BioGridi4260096. 9 interactors.
DIPiDIP-48276N.
STRINGi511145.b1171.

Structurei

Secondary structure

1109
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi31 – 33Combined sources3
Helixi36 – 43Combined sources8
Helixi47 – 62Combined sources16
Turni63 – 65Combined sources3
Helixi73 – 86Combined sources14
Turni87 – 89Combined sources3
Helixi95 – 106Combined sources12

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2LRMNMR-A/B20-109[»]
2LRVNMR-A20-109[»]
ProteinModelPortaliP0AB46.
SMRiP0AB46.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410658X. Bacteria.
ENOG4112AJ2. LUCA.
HOGENOMiHOG000119701.
OMAiCTEANEM.

Family and domain databases

InterProiIPR032497. YmgD.
[Graphical view]
PfamiPF16456. YmgD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AB46-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKFALLAGL FVFAPMTWAQ DYNIKNGLPS ETYITCAEAN EMAKTDSAQV
60 70 80 90 100
AEIVAVMGNA SVASRDLKIE QSPELSAKVV EKLNQVCAKD PQMLLITAID

DTMRAIGKK
Length:109
Mass (Da):11,852
Last modified:December 4, 2007 - v2
Checksum:i01E0B5FD91A0ACFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74255.2.
AP009048 Genomic DNA. Translation: BAA36005.2.
PIRiH64862.
RefSeqiNP_415689.2. NC_000913.3.
WP_001295611.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74255; AAC74255; b1171.
BAA36005; BAA36005; BAA36005.
GeneIDi945732.
KEGGiecj:JW5177.
eco:b1171.
PATRICi32117582. VBIEscCol129921_1213.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74255.2.
AP009048 Genomic DNA. Translation: BAA36005.2.
PIRiH64862.
RefSeqiNP_415689.2. NC_000913.3.
WP_001295611.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2LRMNMR-A/B20-109[»]
2LRVNMR-A20-109[»]
ProteinModelPortaliP0AB46.
SMRiP0AB46.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260096. 9 interactors.
DIPiDIP-48276N.
STRINGi511145.b1171.

Proteomic databases

PaxDbiP0AB46.
PRIDEiP0AB46.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74255; AAC74255; b1171.
BAA36005; BAA36005; BAA36005.
GeneIDi945732.
KEGGiecj:JW5177.
eco:b1171.
PATRICi32117582. VBIEscCol129921_1213.

Organism-specific databases

EchoBASEiEB4040.
EcoGeneiEG14292. ymgD.

Phylogenomic databases

eggNOGiENOG410658X. Bacteria.
ENOG4112AJ2. LUCA.
HOGENOMiHOG000119701.
OMAiCTEANEM.

Enzyme and pathway databases

BioCyciEcoCyc:G6611-MONOMER.
ECOL316407:JW5177-MONOMER.

Miscellaneous databases

PROiP0AB46.

Family and domain databases

InterProiIPR032497. YmgD.
[Graphical view]
PfamiPF16456. YmgD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYMGD_ECOLI
AccessioniPrimary (citable) accession number: P0AB46
Secondary accession number(s): P75998
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: December 4, 2007
Last modified: November 2, 2016
This is version 72 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.