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Protein

Protein YcgL

Gene

ycgL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6616-MONOMER.
ECOL316407:JW1168-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YcgLUniRule annotation
Gene namesi
Name:ycgLUniRule annotation
Ordered Locus Names:b1179, JW1168
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13893. ycgL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001688541 – 108Protein YcgLAdd BLAST108

Proteomic databases

EPDiP0AB43.
PaxDbiP0AB43.
PRIDEiP0AB43.

Interactioni

Protein-protein interaction databases

BioGridi4262869. 238 interactors.
IntActiP0AB43. 37 interactors.
STRINGi511145.b1179.

Structurei

3D structure databases

ProteinModelPortaliP0AB43.
SMRiP0AB43.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 96YcgLUniRule annotationAdd BLAST85

Sequence similaritiesi

Contains 1 YcgL domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VNG. Bacteria.
COG3100. LUCA.
HOGENOMiHOG000218244.
InParanoidiP0AB43.
KOiK09902.

Family and domain databases

HAMAPiMF_01866. UPF0745. 1 hit.
InterProiIPR027354. YcgL_dom.
[Graphical view]
PfamiPF05166. YcgL. 1 hit.
[Graphical view]
ProDomiPD030374. YcgL_domain. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS51648. YCGL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AB43-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKPGILKSK SMFCVIYRSS KRDQTYLYVE KKDDFSRVPE ELMKGFGQPQ
60 70 80 90 100
LAMILPLDGR KKLVNADIEK VKQALTEQGY YLQLPPPPED LLKQHLSVMG

QKTDDTNK
Length:108
Mass (Da):12,415
Last modified:September 7, 2016 - v3
Checksum:iBE5D7CE6DB52D9A2
GO

Sequence cautioni

The sequence AAC74263 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74263.2. Different initiation.
AP009048 Genomic DNA. Translation: BAA36013.1.
PIRiH64863.
RefSeqiNP_415697.4. NC_000913.3.
WP_001125720.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74263; AAC74263; b1179.
BAA36013; BAA36013; BAA36013.
GeneIDi946226.
KEGGiecj:JW1168.
eco:b1179.
PATRICi32117604. VBIEscCol129921_1224.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74263.2. Different initiation.
AP009048 Genomic DNA. Translation: BAA36013.1.
PIRiH64863.
RefSeqiNP_415697.4. NC_000913.3.
WP_001125720.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AB43.
SMRiP0AB43.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262869. 238 interactors.
IntActiP0AB43. 37 interactors.
STRINGi511145.b1179.

Proteomic databases

EPDiP0AB43.
PaxDbiP0AB43.
PRIDEiP0AB43.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74263; AAC74263; b1179.
BAA36013; BAA36013; BAA36013.
GeneIDi946226.
KEGGiecj:JW1168.
eco:b1179.
PATRICi32117604. VBIEscCol129921_1224.

Organism-specific databases

EchoBASEiEB3652.
EcoGeneiEG13893. ycgL.

Phylogenomic databases

eggNOGiENOG4105VNG. Bacteria.
COG3100. LUCA.
HOGENOMiHOG000218244.
InParanoidiP0AB43.
KOiK09902.

Enzyme and pathway databases

BioCyciEcoCyc:G6616-MONOMER.
ECOL316407:JW1168-MONOMER.

Miscellaneous databases

PROiP0AB43.

Family and domain databases

HAMAPiMF_01866. UPF0745. 1 hit.
InterProiIPR027354. YcgL_dom.
[Graphical view]
PfamiPF05166. YcgL. 1 hit.
[Graphical view]
ProDomiPD030374. YcgL_domain. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS51648. YCGL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCGL_ECOLI
AccessioniPrimary (citable) accession number: P0AB43
Secondary accession number(s): P76003
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: September 7, 2016
Last modified: November 2, 2016
This is version 79 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.