Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YcfJ

Gene

ycfJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • regulation of single-species biofilm formation Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG12444-MONOMER.
ECOL316407:JW1096-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcfJ
Gene namesi
Name:ycfJ
Ordered Locus Names:b1110, JW1096
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12444. ycfJ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei5 – 2521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 179179Uncharacterized protein YcfJPRO_0000168832Add
BLAST

Proteomic databases

PaxDbiP0AB35.

Interactioni

Protein-protein interaction databases

BioGridi4263207. 13 interactions.
IntActiP0AB35. 1 interaction.
STRINGi511145.b1110.

Structurei

3D structure databases

ProteinModelPortaliP0AB35.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To Rickettsia 17 kDa surface antigen.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107MBR. Bacteria.
COG3134. LUCA.
HOGENOMiHOG000220582.
InParanoidiP0AB35.
OMAiPREVCKD.

Family and domain databases

InterProiIPR008816. Gly_zipper_2TM_dom.
[Graphical view]
PfamiPF05433. Rick_17kDa_Anti. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AB35-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKSMLAGIG IGVAAALGVA AVASLNVFER GPQYAQVVSA TPIKETVKTP
60 70 80 90 100
RQECRNVTVT HRRPVQDENR ITGSVLGAVA GGVIGHQFGG GRGKDVATVV
110 120 130 140 150
GALGGGYAGN QIQGSLQESD TYTTTQQRCK TVYDKSEKML GYDVTYKIGD
160 170
QQGKIRMDRD PGTQIPLDSN GQLILNNKV
Length:179
Mass (Da):18,920
Last modified:October 11, 2005 - v1
Checksum:iBA5EB0DB56D45609
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74194.1.
AP009048 Genomic DNA. Translation: BAA35925.1.
V00306 Genomic DNA. No translation available.
PIRiC64855.
RefSeqiNP_415628.1. NC_000913.3.
WP_001043459.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74194; AAC74194; b1110.
BAA35925; BAA35925; BAA35925.
GeneIDi945977.
KEGGiecj:JW1096.
eco:b1110.
PATRICi32117463. VBIEscCol129921_1154.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74194.1.
AP009048 Genomic DNA. Translation: BAA35925.1.
V00306 Genomic DNA. No translation available.
PIRiC64855.
RefSeqiNP_415628.1. NC_000913.3.
WP_001043459.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AB35.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263207. 13 interactions.
IntActiP0AB35. 1 interaction.
STRINGi511145.b1110.

Proteomic databases

PaxDbiP0AB35.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74194; AAC74194; b1110.
BAA35925; BAA35925; BAA35925.
GeneIDi945977.
KEGGiecj:JW1096.
eco:b1110.
PATRICi32117463. VBIEscCol129921_1154.

Organism-specific databases

EchoBASEiEB2338.
EcoGeneiEG12444. ycfJ.

Phylogenomic databases

eggNOGiENOG4107MBR. Bacteria.
COG3134. LUCA.
HOGENOMiHOG000220582.
InParanoidiP0AB35.
OMAiPREVCKD.

Enzyme and pathway databases

BioCyciEcoCyc:EG12444-MONOMER.
ECOL316407:JW1096-MONOMER.

Miscellaneous databases

PROiP0AB35.

Family and domain databases

InterProiIPR008816. Gly_zipper_2TM_dom.
[Graphical view]
PfamiPF05433. Rick_17kDa_Anti. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCFJ_ECOLI
AccessioniPrimary (citable) accession number: P0AB35
Secondary accession number(s): P37796, P75951
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: September 7, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.