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Protein

Large ribosomal RNA subunit accumulation protein YceD

Gene

yceD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Plays a role in synthesis, processing and/or stability of 23S rRNA.1 Publication

GO - Biological processi

Keywordsi

Biological processRibosome biogenesis

Enzyme and pathway databases

BioCyciEcoCyc:EG11119-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Large ribosomal RNA subunit accumulation protein YceD
Alternative name(s):
23S rRNA accumulation protein YceD1 Publication
G30K1 Publication
Gene namesi
Name:yceD
Synonyms:g30k1 Publication
Ordered Locus Names:b1088, JW1074
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11119 yceD

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

Pathology & Biotechi

Disruption phenotypei

Accumulates reduced levels of 23S rRNA, no significant difference in 16S or 5S rRNA levels, nor in rpmF transcripts (ribosomal protein L32, next gene in its operon). No visible growth defects on rich medium at 37 or 25 degrees Celsius.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001688111 – 173Large ribosomal RNA subunit accumulation protein YceDAdd BLAST173

Proteomic databases

PaxDbiP0AB28
PRIDEiP0AB28

Expressioni

Inductioni

Part of the yceD-rpmF operon.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4261028, 16 interactors
IntActiP0AB28, 11 interactors
STRINGi316385.ECDH10B_1160

Structurei

3D structure databases

ProteinModelPortaliP0AB28
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DUF177 domain family.Curated

Phylogenomic databases

eggNOGiENOG4105FCQ Bacteria
COG1399 LUCA
HOGENOMiHOG000258050
InParanoidiP0AB28
KOiK07040
OMAiTLLCQRC
PhylomeDBiP0AB28

Family and domain databases

InterProiView protein in InterPro
IPR003772 YceD
PfamiView protein in Pfam
PF02620 DUF177, 1 hit

Sequencei

Sequence statusi: Complete.

P0AB28-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKVKLPLTL DPVRTAQKRL DYQGIYTPDQ VERVAESVVS VDSDVECSMS
60 70 80 90 100
FAIDNQRLAV LNGDAKVTVT LECQRCGKPF THQVYTTYCF SPVRSDEQAE
110 120 130 140 150
ALPEAYEPIE VNEFGEIDLL AMVEDEIILA LPVVPVHDSE HCEVSEADMV
160 170
FGELPEEAQK PNPFAVLASL KRK
Length:173
Mass (Da):19,315
Last modified:October 11, 2005 - v1
Checksum:iB9A75B15F13BF6C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M29698 Genomic DNA Translation: AAA24574.1
U00096 Genomic DNA Translation: AAC74172.1
AP009048 Genomic DNA Translation: BAA35896.1
M96791 Genomic DNA Translation: AAA23830.1
PIRiJV0047
RefSeqiNP_415606.1, NC_000913.3
WP_001174481.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74172; AAC74172; b1088
BAA35896; BAA35896; BAA35896
GeneIDi945650
KEGGiecj:JW1074
eco:b1088
PATRICifig|511145.12.peg.1131

Similar proteinsi

Entry informationi

Entry nameiYCED_ECOLI
AccessioniPrimary (citable) accession number: P0AB28
Secondary accession number(s): P14189
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 28, 2018
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health