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Protein

Inner membrane protein YccF

Gene

yccF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6496-MONOMER

Protein family/group databases

TCDBi9.B.55.1.1 the 4 tms duf307/yccf (duf307) family

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YccF
Gene namesi
Name:yccF
Ordered Locus Names:b0961, JW0944
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi

Organism-specific databases

EcoGeneiEG12306 yccF

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 14PeriplasmicSequence analysisAdd BLAST14
Transmembranei15 – 37HelicalSequence analysisAdd BLAST23
Topological domaini38 – 76CytoplasmicSequence analysisAdd BLAST39
Transmembranei77 – 99HelicalSequence analysisAdd BLAST23
Topological domaini100 – 102PeriplasmicSequence analysis3
Transmembranei103 – 125HelicalSequence analysisAdd BLAST23
Topological domaini126 – 148CytoplasmicSequence analysisAdd BLAST23

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687831 – 148Inner membrane protein YccFAdd BLAST148

Proteomic databases

PaxDbiP0AB12
PRIDEiP0AB12

Interactioni

Protein-protein interaction databases

BioGridi4262836, 27 interactors
STRINGi316385.ECDH10B_1031

Structurei

3D structure databases

ProteinModelPortaliP0AB12
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410901E Bacteria
COG3304 LUCA
HOGENOMiHOG000251868
InParanoidiP0AB12
OMAiFGLQCFK
PhylomeDBiP0AB12

Family and domain databases

InterProiView protein in InterPro
IPR031308 UCP028777
IPR005185 YccF
PfamiView protein in Pfam
PF03733 YccF, 2 hits
PIRSFiPIRSF028777 UCP028777, 1 hit

Sequencei

Sequence statusi: Complete.

P0AB12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTVLNILNF VLGGFATTLG WLLATLVSIV LIFTLPLTRS CWEITKLSLV
60 70 80 90 100
PYGNEAIHVD ELNPAGKNVL LNTGGTVLNI FWLIFFGWWL CLMHIATGIA
110 120 130 140
QCISIIGIPV GIANFKIAAI ALWPVGRRVV SVETAQAARE ANARRRFE
Length:148
Mass (Da):16,275
Last modified:October 11, 2005 - v1
Checksum:iD9859C2A156D3B26
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74047.1
AP009048 Genomic DNA Translation: BAA35719.1
J04726 Genomic DNA No translation available.
PIRiH64836
RefSeqiNP_415481.1, NC_000913.3
WP_001261235.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74047; AAC74047; b0961
BAA35719; BAA35719; BAA35719
GeneIDi945594
KEGGiecj:JW0944
eco:b0961
PATRICifig|1411691.4.peg.1313

Entry informationi

Entry nameiYCCF_ECOLI
AccessioniPrimary (citable) accession number: P0AB12
Secondary accession number(s): P37065, P75871
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 28, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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