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Protein

Inner membrane protein YccF

Gene

yccF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6496-MONOMER.
ECOL316407:JW0944-MONOMER.

Protein family/group databases

TCDBi9.B.55.1.1. the 4 tms duf307/yccf (duf307) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YccF
Gene namesi
Name:yccF
Ordered Locus Names:b0961, JW0944
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12306. yccF.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1414PeriplasmicSequence analysisAdd
BLAST
Transmembranei15 – 3723HelicalSequence analysisAdd
BLAST
Topological domaini38 – 7639CytoplasmicSequence analysisAdd
BLAST
Transmembranei77 – 9923HelicalSequence analysisAdd
BLAST
Topological domaini100 – 1023PeriplasmicSequence analysis
Transmembranei103 – 12523HelicalSequence analysisAdd
BLAST
Topological domaini126 – 14823CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 148148Inner membrane protein YccFPRO_0000168783Add
BLAST

Proteomic databases

PaxDbiP0AB12.

Interactioni

Protein-protein interaction databases

BioGridi4262836. 21 interactions.
STRINGi511145.b0961.

Structurei

3D structure databases

ProteinModelPortaliP0AB12.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410901E. Bacteria.
COG3304. LUCA.
HOGENOMiHOG000251868.
InParanoidiP0AB12.
OMAiFGLQCFK.
OrthoDBiEOG6X113S.
PhylomeDBiP0AB12.

Family and domain databases

InterProiIPR031308. UCP028777.
IPR005185. YccF.
[Graphical view]
PfamiPF03733. YccF. 2 hits.
[Graphical view]
PIRSFiPIRSF028777. UCP028777. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AB12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTVLNILNF VLGGFATTLG WLLATLVSIV LIFTLPLTRS CWEITKLSLV
60 70 80 90 100
PYGNEAIHVD ELNPAGKNVL LNTGGTVLNI FWLIFFGWWL CLMHIATGIA
110 120 130 140
QCISIIGIPV GIANFKIAAI ALWPVGRRVV SVETAQAARE ANARRRFE
Length:148
Mass (Da):16,275
Last modified:October 11, 2005 - v1
Checksum:iD9859C2A156D3B26
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74047.1.
AP009048 Genomic DNA. Translation: BAA35719.1.
J04726 Genomic DNA. No translation available.
PIRiH64836.
RefSeqiNP_415481.1. NC_000913.3.
WP_001261235.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74047; AAC74047; b0961.
BAA35719; BAA35719; BAA35719.
GeneIDi945594.
KEGGiecj:JW0944.
eco:b0961.
PATRICi32117141. VBIEscCol129921_0995.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74047.1.
AP009048 Genomic DNA. Translation: BAA35719.1.
J04726 Genomic DNA. No translation available.
PIRiH64836.
RefSeqiNP_415481.1. NC_000913.3.
WP_001261235.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AB12.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262836. 21 interactions.
STRINGi511145.b0961.

Protein family/group databases

TCDBi9.B.55.1.1. the 4 tms duf307/yccf (duf307) family.

Proteomic databases

PaxDbiP0AB12.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74047; AAC74047; b0961.
BAA35719; BAA35719; BAA35719.
GeneIDi945594.
KEGGiecj:JW0944.
eco:b0961.
PATRICi32117141. VBIEscCol129921_0995.

Organism-specific databases

EchoBASEiEB2212.
EcoGeneiEG12306. yccF.

Phylogenomic databases

eggNOGiENOG410901E. Bacteria.
COG3304. LUCA.
HOGENOMiHOG000251868.
InParanoidiP0AB12.
OMAiFGLQCFK.
OrthoDBiEOG6X113S.
PhylomeDBiP0AB12.

Enzyme and pathway databases

BioCyciEcoCyc:G6496-MONOMER.
ECOL316407:JW0944-MONOMER.

Miscellaneous databases

PROiP0AB12.

Family and domain databases

InterProiIPR031308. UCP028777.
IPR005185. YccF.
[Graphical view]
PfamiPF03733. YccF. 2 hits.
[Graphical view]
PIRSFiPIRSF028777. UCP028777. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "The molecular cloning of the gene encoding the Escherichia coli 75-kDa helicase and the determination of its nucleotide sequence and gentic map position."
    Wood E.R., Matson S.W.
    J. Biol. Chem. 264:8297-8303(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-35.
  5. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
    Borodovsky M., Rudd K.E., Koonin E.V.
    Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.
  6. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYCCF_ECOLI
AccessioniPrimary (citable) accession number: P0AB12
Secondary accession number(s): P37065, P75871
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 17, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.