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Protein

Inner membrane protein YbjO

Gene

ybjO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6448-MONOMER.
ECOL316407:JW0842-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbjO
Gene namesi
Name:ybjO
Ordered Locus Names:b0858, JW0842
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13684. ybjO.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2323PeriplasmicSequence analysisAdd
BLAST
Transmembranei24 – 4421HelicalSequence analysisAdd
BLAST
Topological domaini45 – 6622CytoplasmicSequence analysisAdd
BLAST
Transmembranei67 – 8721HelicalSequence analysisAdd
BLAST
Topological domaini88 – 947PeriplasmicSequence analysis
Transmembranei95 – 11521HelicalSequence analysisAdd
BLAST
Topological domaini116 – 16247CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 162162Inner membrane protein YbjOPRO_0000168747Add
BLAST

Proteomic databases

PaxDbiP0AAZ0.

Interactioni

Protein-protein interaction databases

BioGridi4261280. 11 interactions.
DIPiDIP-48193N.
IntActiP0AAZ0. 1 interaction.
MINTiMINT-1308286.
STRINGi511145.b0858.

Structurei

3D structure databases

ProteinModelPortaliP0AAZ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105RBQ. Bacteria.
ENOG4111U50. LUCA.
HOGENOMiHOG000118249.
OMAiIATRCLG.

Family and domain databases

InterProiIPR019703. DUF2593.
[Graphical view]
PfamiPF10767. DUF2593. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAZ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDETLGFFK KTSSSHARLN VPALVQVAAL AIIMIRGLDV LMIFNTLGVR
60 70 80 90 100
GIGEFIHRSV QTWSLTLVFL SSLVLVFIEI WCAFSLVKGR RWARWLYLLT
110 120 130 140 150
QITAASYLWA ASLGYGYPEL FSIPGESKRE IFHSLMLQKL PDMLILMLLF
160
VPSTSRRFFQ LQ
Length:162
Mass (Da):18,518
Last modified:October 11, 2005 - v1
Checksum:iC618B11524CB0DCB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73945.1.
AP009048 Genomic DNA. Translation: BAA35569.1.
PIRiB64824.
RefSeqiNP_415379.1. NC_000913.3.
WP_000389260.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73945; AAC73945; b0858.
BAA35569; BAA35569; BAA35569.
GeneIDi945488.
KEGGiecj:JW0842.
eco:b0858.
PATRICi32116921. VBIEscCol129921_0886.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73945.1.
AP009048 Genomic DNA. Translation: BAA35569.1.
PIRiB64824.
RefSeqiNP_415379.1. NC_000913.3.
WP_000389260.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAZ0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261280. 11 interactions.
DIPiDIP-48193N.
IntActiP0AAZ0. 1 interaction.
MINTiMINT-1308286.
STRINGi511145.b0858.

Proteomic databases

PaxDbiP0AAZ0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73945; AAC73945; b0858.
BAA35569; BAA35569; BAA35569.
GeneIDi945488.
KEGGiecj:JW0842.
eco:b0858.
PATRICi32116921. VBIEscCol129921_0886.

Organism-specific databases

EchoBASEiEB3448.
EcoGeneiEG13684. ybjO.

Phylogenomic databases

eggNOGiENOG4105RBQ. Bacteria.
ENOG4111U50. LUCA.
HOGENOMiHOG000118249.
OMAiIATRCLG.

Enzyme and pathway databases

BioCyciEcoCyc:G6448-MONOMER.
ECOL316407:JW0842-MONOMER.

Miscellaneous databases

PROiP0AAZ0.

Family and domain databases

InterProiIPR019703. DUF2593.
[Graphical view]
PfamiPF10767. DUF2593. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBJO_ECOLI
AccessioniPrimary (citable) accession number: P0AAZ0
Secondary accession number(s): P75816
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: September 7, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.