Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YbiJ

Gene

ybiJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG12422-MONOMER.
ECOL316407:JW0787-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbiJ
Gene namesi
Name:ybiJ
Ordered Locus Names:b0802, JW0787
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12422. ybiJ.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 8664Uncharacterized protein YbiJPRO_0000013812Add
BLAST

Proteomic databases

PaxDbiP0AAX3.
PRIDEiP0AAX3.

Interactioni

Protein-protein interaction databases

BioGridi4259967. 17 interactions.
STRINGi511145.b0802.

Structurei

3D structure databases

ProteinModelPortaliP0AAX3.
SMRiP0AAX3. Positions 1-86.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the BhsA/McbA family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105VR4. Bacteria.
ENOG41122K9. LUCA.
HOGENOMiHOG000117400.
InParanoidiP0AAX3.
OMAiHATAVIY.
PhylomeDBiP0AAX3.

Family and domain databases

Gene3Di3.30.1660.10. 1 hit.
InterProiIPR025543. Dodecin-like.
IPR010854. DUF1471.
[Graphical view]
PfamiPF07338. DUF1471. 1 hit.
[Graphical view]
SUPFAMiSSF159871. SSF159871. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AAX3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTINTVVAA MALSTLSFGV FAAEPVTASQ AQNMNKIGVV SADGASTLDA
60 70 80
LEAKLAEKAA AAGASGYSIT SATNNNKLSG TAVIYK
Length:86
Mass (Da):8,568
Last modified:October 11, 2005 - v1
Checksum:iF939229B644FF8E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73889.1.
AP009048 Genomic DNA. Translation: BAA35468.1.
PIRiB64817.
RefSeqiNP_415323.1. NC_000913.3.
WP_000849301.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73889; AAC73889; b0802.
BAA35468; BAA35468; BAA35468.
GeneIDi945433.
KEGGiecj:JW0787.
eco:b0802.
PATRICi32116807. VBIEscCol129921_0829.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73889.1.
AP009048 Genomic DNA. Translation: BAA35468.1.
PIRiB64817.
RefSeqiNP_415323.1. NC_000913.3.
WP_000849301.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAX3.
SMRiP0AAX3. Positions 1-86.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259967. 17 interactions.
STRINGi511145.b0802.

Proteomic databases

PaxDbiP0AAX3.
PRIDEiP0AAX3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73889; AAC73889; b0802.
BAA35468; BAA35468; BAA35468.
GeneIDi945433.
KEGGiecj:JW0787.
eco:b0802.
PATRICi32116807. VBIEscCol129921_0829.

Organism-specific databases

EchoBASEiEB2321.
EcoGeneiEG12422. ybiJ.

Phylogenomic databases

eggNOGiENOG4105VR4. Bacteria.
ENOG41122K9. LUCA.
HOGENOMiHOG000117400.
InParanoidiP0AAX3.
OMAiHATAVIY.
PhylomeDBiP0AAX3.

Enzyme and pathway databases

BioCyciEcoCyc:EG12422-MONOMER.
ECOL316407:JW0787-MONOMER.

Miscellaneous databases

PROiP0AAX3.

Family and domain databases

Gene3Di3.30.1660.10. 1 hit.
InterProiIPR025543. Dodecin-like.
IPR010854. DUF1471.
[Graphical view]
PfamiPF07338. DUF1471. 1 hit.
[Graphical view]
SUPFAMiSSF159871. SSF159871. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBIJ_ECOLI
AccessioniPrimary (citable) accession number: P0AAX3
Secondary accession number(s): P41038
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: September 7, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.