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Protein

Uncharacterized protein YbgJ

Gene

ybgJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6380-MONOMER
MetaCyc:G6380-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbgJ
Gene namesi
Name:ybgJ
Ordered Locus Names:b0711, JW0701
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13306 ybgJ

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687061 – 218Uncharacterized protein YbgJAdd BLAST218

Proteomic databases

PaxDbiP0AAV4
PRIDEiP0AAV4

Interactioni

Protein-protein interaction databases

BioGridi4259931, 194 interactors
DIPiDIP-48145N
IntActiP0AAV4, 5 interactors
STRINGi316385.ECDH10B_0778

Structurei

Secondary structure

1218
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 9Combined sources6
Turni10 – 12Combined sources3
Beta strandi13 – 18Combined sources6
Helixi24 – 38Combined sources15
Beta strandi44 – 48Combined sources5
Beta strandi53 – 56Combined sources4
Helixi60 – 77Combined sources18
Beta strandi87 – 95Combined sources9
Turni96 – 98Combined sources3
Helixi102 – 109Combined sources8
Helixi113 – 122Combined sources10
Beta strandi125 – 130Combined sources6
Beta strandi137 – 139Combined sources3
Helixi144 – 146Combined sources3
Beta strandi162 – 166Combined sources5
Beta strandi169 – 173Combined sources5
Beta strandi181 – 187Combined sources7
Beta strandi196 – 201Combined sources6
Beta strandi207 – 213Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5DUDX-ray2.80B/D1-218[»]
ProteinModelPortaliP0AAV4
SMRiP0AAV4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1731.Curated
To B.subtilis YcsJ and yeast urea amidolyase (DUR1,2).Curated

Phylogenomic databases

eggNOGiENOG4105P4J Bacteria
COG2049 LUCA
HOGENOMiHOG000265714
InParanoidiP0AAV4
OMAiQPGFAYM
PhylomeDBiP0AAV4

Family and domain databases

Gene3Di2.40.100.10, 1 hit
InterProiView protein in InterPro
IPR003833 CT_C_D
IPR029000 Cyclophilin-like_dom_sf
IPR010016 KipI_fam
PANTHERiPTHR34698 PTHR34698, 1 hit
PfamiView protein in Pfam
PF02682 CT_C_D, 1 hit
SMARTiView protein in SMART
SM00796 AHS1, 1 hit
SUPFAMiSSF50891 SSF50891, 1 hit
TIGRFAMsiTIGR00370 TIGR00370, 1 hit

Sequencei

Sequence statusi: Complete.

P0AAV4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRARCYLIG ETAVVLELEP PVTLASQKRI WRLAQRLVDM PNVVEAIPGM
60 70 80 90 100
NNITVILRNP ESLALDAIER LQRWWEESEA LEPESRFIEI PVVYGGAGGP
110 120 130 140 150
DLAVVAAHCG LSEKQVVELH SSVEYVVWFL GFQPGFPYLG SLPEQLHTPR
160 170 180 190 200
RAEPRLLVPA GSVGIGGPQT GVYPLATPGG WQLIGHTSLS LFDPARDEPI
210
LLRPGDSVRF VPQKEGVC
Length:218
Mass (Da):23,947
Last modified:October 11, 2005 - v1
Checksum:i6AEBA50408732890
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC73805.1
AP009048 Genomic DNA Translation: BAA35375.1
PIRiF64806
RefSeqiNP_415239.1, NC_000913.3
WP_001188343.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73805; AAC73805; b0711
BAA35375; BAA35375; BAA35375
GeneIDi945311
KEGGiecj:JW0701
eco:b0711
PATRICifig|1411691.4.peg.1562

Similar proteinsi

Entry informationi

Entry nameiYBGJ_ECOLI
AccessioniPrimary (citable) accession number: P0AAV4
Secondary accession number(s): P75744
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 28, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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