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Protein

Uncharacterized protein YbgE

Gene

ybgE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12395-MONOMER.
ECOL316407:JW0725-MONOMER.

Protein family/group databases

TCDBi8.A.79.1.1. the 3 tms cyd operon protein, cydx (cydx) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbgE
Gene namesi
Name:ybgE
Ordered Locus Names:b0735, JW0725
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12395. ybgE.

Pathology & Biotechi

Disruption phenotypei

Not essential, no change in sensitivity to reductant (beta-mercaptoethanol), may not play a role in cytochrome bd-I oxidase.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687021 – 97Uncharacterized protein YbgEAdd BLAST97

Proteomic databases

PaxDbiP0AAV0.
PRIDEiP0AAV0.

Interactioni

Protein-protein interaction databases

BioGridi4259451. 7 interactors.
IntActiP0AAV0. 2 interactors.
STRINGi511145.b0735.

Structurei

3D structure databases

ProteinModelPortaliP0AAV0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105KJB. Bacteria.
COG3790. LUCA.
HOGENOMiHOG000283081.
OMAiMDKSPLR.

Family and domain databases

InterProiIPR011846. Cyd_oper_YbgE.
[Graphical view]
PfamiPF09600. Cyd_oper_YbgE. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02112. cyd_oper_ybgE. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AAV0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKIIATLYA VMDKRPLRAL SFVMALLLAG CMFWDPSRFA AKTSELEIWH
60 70 80 90
GLLLMWAVCA GVIHGVGFRP QKVLWQGIFC PLLADIVLIV GLIFFFF
Length:97
Mass (Da):10,932
Last modified:October 11, 2005 - v1
Checksum:i2D34484BE99E8AC9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U30934 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73829.1.
AP009048 Genomic DNA. Translation: BAA35401.1.
J03939 Unassigned DNA. No translation available.
PIRiF64809.
RefSeqiNP_415263.1. NC_000913.3.
WP_000034602.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73829; AAC73829; b0735.
BAA35401; BAA35401; BAA35401.
GeneIDi945326.
KEGGiecj:JW0725.
eco:b0735.
PATRICi32116669. VBIEscCol129921_0767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U30934 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73829.1.
AP009048 Genomic DNA. Translation: BAA35401.1.
J03939 Unassigned DNA. No translation available.
PIRiF64809.
RefSeqiNP_415263.1. NC_000913.3.
WP_000034602.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAV0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259451. 7 interactors.
IntActiP0AAV0. 2 interactors.
STRINGi511145.b0735.

Protein family/group databases

TCDBi8.A.79.1.1. the 3 tms cyd operon protein, cydx (cydx) family.

Proteomic databases

PaxDbiP0AAV0.
PRIDEiP0AAV0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73829; AAC73829; b0735.
BAA35401; BAA35401; BAA35401.
GeneIDi945326.
KEGGiecj:JW0725.
eco:b0735.
PATRICi32116669. VBIEscCol129921_0767.

Organism-specific databases

EchoBASEiEB2296.
EcoGeneiEG12395. ybgE.

Phylogenomic databases

eggNOGiENOG4105KJB. Bacteria.
COG3790. LUCA.
HOGENOMiHOG000283081.
OMAiMDKSPLR.

Enzyme and pathway databases

BioCyciEcoCyc:EG12395-MONOMER.
ECOL316407:JW0725-MONOMER.

Miscellaneous databases

PROiP0AAV0.

Family and domain databases

InterProiIPR011846. Cyd_oper_YbgE.
[Graphical view]
PfamiPF09600. Cyd_oper_YbgE. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02112. cyd_oper_ybgE. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBGE_ECOLI
AccessioniPrimary (citable) accession number: P0AAV0
Secondary accession number(s): P37343, P75755
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 2, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.