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Protein

Uncharacterized protein YbgE

Gene

ybgE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12395-MONOMER.
ECOL316407:JW0725-MONOMER.

Protein family/group databases

TCDBi9.B.59.1.1. the 3 tms cyd operon protein, ybge (ybge) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbgE
Gene namesi
Name:ybgE
Ordered Locus Names:b0735, JW0725
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12395. ybgE.

Pathology & Biotechi

Disruption phenotypei

Not essential, no change in sensitivity to reductant (beta-mercaptoethanol), may not play a role in cytochrome bd-I oxidase.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9797Uncharacterized protein YbgEPRO_0000168702Add
BLAST

Proteomic databases

PaxDbiP0AAV0.

Interactioni

Protein-protein interaction databases

BioGridi4259451. 7 interactions.
IntActiP0AAV0. 2 interactions.
STRINGi511145.b0735.

Structurei

3D structure databases

ProteinModelPortaliP0AAV0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105KJB. Bacteria.
COG3790. LUCA.
HOGENOMiHOG000283081.
OMAiLIWAVCS.
OrthoDBiEOG610492.

Family and domain databases

InterProiIPR011846. Cyd_oper_YbgE.
[Graphical view]
PfamiPF09600. Cyd_oper_YbgE. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02112. cyd_oper_ybgE. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AAV0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKIIATLYA VMDKRPLRAL SFVMALLLAG CMFWDPSRFA AKTSELEIWH
60 70 80 90
GLLLMWAVCA GVIHGVGFRP QKVLWQGIFC PLLADIVLIV GLIFFFF
Length:97
Mass (Da):10,932
Last modified:October 11, 2005 - v1
Checksum:i2D34484BE99E8AC9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U30934 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73829.1.
AP009048 Genomic DNA. Translation: BAA35401.1.
J03939 Unassigned DNA. No translation available.
PIRiF64809.
RefSeqiNP_415263.1. NC_000913.3.
WP_000034602.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73829; AAC73829; b0735.
BAA35401; BAA35401; BAA35401.
GeneIDi945326.
KEGGiecj:JW0725.
eco:b0735.
PATRICi32116669. VBIEscCol129921_0767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U30934 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73829.1.
AP009048 Genomic DNA. Translation: BAA35401.1.
J03939 Unassigned DNA. No translation available.
PIRiF64809.
RefSeqiNP_415263.1. NC_000913.3.
WP_000034602.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAV0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259451. 7 interactions.
IntActiP0AAV0. 2 interactions.
STRINGi511145.b0735.

Protein family/group databases

TCDBi9.B.59.1.1. the 3 tms cyd operon protein, ybge (ybge) family.

Proteomic databases

PaxDbiP0AAV0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73829; AAC73829; b0735.
BAA35401; BAA35401; BAA35401.
GeneIDi945326.
KEGGiecj:JW0725.
eco:b0735.
PATRICi32116669. VBIEscCol129921_0767.

Organism-specific databases

EchoBASEiEB2296.
EcoGeneiEG12395. ybgE.

Phylogenomic databases

eggNOGiENOG4105KJB. Bacteria.
COG3790. LUCA.
HOGENOMiHOG000283081.
OMAiLIWAVCS.
OrthoDBiEOG610492.

Enzyme and pathway databases

BioCyciEcoCyc:EG12395-MONOMER.
ECOL316407:JW0725-MONOMER.

Miscellaneous databases

PROiP0AAV0.

Family and domain databases

InterProiIPR011846. Cyd_oper_YbgE.
[Graphical view]
PfamiPF09600. Cyd_oper_YbgE. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02112. cyd_oper_ybgE. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "The nucleotide sequence of the cyd locus encoding the two subunits of the cytochrome d terminal oxidase complex of Escherichia coli."
    Green G.N., Fang H., Lin R.-J., Newton G., Mather M., Georgiou C.D., Gennis R.B.
    J. Biol. Chem. 263:13138-13143(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-6.
  6. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
    Borodovsky M., Rudd K.E., Koonin E.V.
    Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.
  7. "Characterization of the tol-pal and cyd region of Escherichia coli K-12: transcript analysis and identification of two new proteins encoded by the cyd operon."
    Muller M.M., Webster R.E.
    J. Bacteriol. 179:2077-2080(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.
    Strain: K12 / MG1655 / ATCC 47076.
  8. "The Escherichia coli CydX protein is a member of the CydAB cytochrome bd oxidase complex and is required for cytochrome bd oxidase activity."
    Vanorsdel C.E., Bhatt S., Allen R.J., Brenner E.P., Hobson J.J., Jamil A., Haynes B.M., Genson A.M., Hemm M.R.
    J. Bacteriol. 195:3640-3650(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: DISRUPTION PHENOTYPE.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYBGE_ECOLI
AccessioniPrimary (citable) accession number: P0AAV0
Secondary accession number(s): P37343, P75755
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 20, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.