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Protein

Uncharacterized protein YbdF

Gene

ybdF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6324-MONOMER.
ECOL316407:JW5083-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbdF
Gene namesi
Name:ybdF
Ordered Locus Names:b0579, JW5083
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12619. ybdF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 122122Uncharacterized protein YbdFPRO_0000168665Add
BLAST

Proteomic databases

PaxDbiP0AAT2.
PRIDEiP0AAT2.

Interactioni

Protein-protein interaction databases

BioGridi4260714. 18 interactions.
DIPiDIP-48140N.
STRINGi511145.b0579.

Structurei

3D structure databases

ProteinModelPortaliP0AAT2.
SMRiP0AAT2. Positions 16-119.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105MSB. Bacteria.
COG2315. LUCA.
HOGENOMiHOG000013133.
InParanoidiP0AAT2.
OMAiELIDHSY.
OrthoDBiEOG6KHG51.
PhylomeDBiP0AAT2.

Family and domain databases

InterProiIPR007351. YjbR.
[Graphical view]
PfamiPF04237. YjbR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAT2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDKQSLHETA KRLALELPFV ELCWPFGPEF DVFKIGGKIF MLSSELRGVP
60 70 80 90 100
FINLKSDPQK SLLNQQIYPS IKPGYHMNKK HWISVYPGEE ISEALLRDLI
110 120
NDSWNLVVDG LAKRDQKRVR PG
Length:122
Mass (Da):14,050
Last modified:October 11, 2005 - v1
Checksum:i91C93C810A345A62
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti93 – 931E → G (Ref. 5) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40777.1.
U00096 Genomic DNA. Translation: AAC73680.1.
AP009048 Genomic DNA. Translation: BAA35219.2.
D25414 Genomic DNA. No translation available.
U07860 Genomic DNA. Translation: AAC43264.1.
PIRiA64791.
RefSeqiNP_415111.1. NC_000913.3.
WP_000360951.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73680; AAC73680; b0579.
BAA35219; BAA35219; BAA35219.
GeneIDi948302.
KEGGiecj:JW5083.
eco:b0579.
PATRICi32116326. VBIEscCol129921_0603.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40777.1.
U00096 Genomic DNA. Translation: AAC73680.1.
AP009048 Genomic DNA. Translation: BAA35219.2.
D25414 Genomic DNA. No translation available.
U07860 Genomic DNA. Translation: AAC43264.1.
PIRiA64791.
RefSeqiNP_415111.1. NC_000913.3.
WP_000360951.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAT2.
SMRiP0AAT2. Positions 16-119.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260714. 18 interactions.
DIPiDIP-48140N.
STRINGi511145.b0579.

Proteomic databases

PaxDbiP0AAT2.
PRIDEiP0AAT2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73680; AAC73680; b0579.
BAA35219; BAA35219; BAA35219.
GeneIDi948302.
KEGGiecj:JW5083.
eco:b0579.
PATRICi32116326. VBIEscCol129921_0603.

Organism-specific databases

EchoBASEiEB2503.
EcoGeneiEG12619. ybdF.

Phylogenomic databases

eggNOGiENOG4105MSB. Bacteria.
COG2315. LUCA.
HOGENOMiHOG000013133.
InParanoidiP0AAT2.
OMAiELIDHSY.
OrthoDBiEOG6KHG51.
PhylomeDBiP0AAT2.

Enzyme and pathway databases

BioCyciEcoCyc:G6324-MONOMER.
ECOL316407:JW5083-MONOMER.

Miscellaneous databases

PROiP0AAT2.

Family and domain databases

InterProiIPR007351. YjbR.
[Graphical view]
PfamiPF04237. YjbR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Gene cloning, purification, and characterization of NfsB, a minor oxygen-insensitive nitroreductase from Escherichia coli, similar in biochemical properties to FRaseI, the major flavin reductase in Vibrio fischeri."
    Zenno S., Koike H., Tanokura M., Saigo K.
    Submitted (SEP-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 88-122.
    Strain: K12 / C600 / ATCC 23724 / DSM 3925 / LMG 3041 / NCIB 10222.
  6. "Physical characterisation of the Escherichia coli B gene encoding nitroreductase and its over-expression in Escherichia coli K12."
    Michael N.P., Brehm J.K., Anlezark G.M., Minton N.P.
    FEMS Microbiol. Lett. 124:195-202(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 97-122.
    Strain: B.

Entry informationi

Entry nameiYBDF_ECOLI
AccessioniPrimary (citable) accession number: P0AAT2
Secondary accession number(s): P39454, P77200, Q9R7T8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 20, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.