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Protein

Uncharacterized protein YbdD

Gene

ybdD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2660.
ECOL316407:JW0591-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbdD
Gene namesi
Name:ybdD
Ordered Locus Names:b4512, JW0591
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11107. ybdD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6565Uncharacterized protein YbdDPRO_0000168662Add
BLAST

Proteomic databases

PaxDbiP0AAS9.
PRIDEiP0AAS9.

Interactioni

Protein-protein interaction databases

BioGridi4260983. 4 interactions.
IntActiP0AAS9. 8 interactions.
STRINGi511145.b4512.

Structurei

3D structure databases

ProteinModelPortaliP0AAS9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YjiX.Curated

Phylogenomic databases

eggNOGiENOG4105VCD. Bacteria.
COG2879. LUCA.
HOGENOMiHOG000239011.
InParanoidiP0AAS9.
OMAiMDYKTFF.
OrthoDBiEOG6M9F3Z.
PhylomeDBiP0AAS9.

Family and domain databases

InterProiIPR007423. DUF466.
[Graphical view]
PfamiPF04328. DUF466. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAS9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFDSLAKAGK YLGQAAKLMI GMPDYDNYVE HMRVNHPDQT PMTYEEFFRE
60
RQDARYGGKG GARCC
Length:65
Mass (Da):7,467
Last modified:October 11, 2005 - v1
Checksum:iF4A27656776F99AA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X52904 Genomic DNA. Translation: CAA37088.1.
U82598 Genomic DNA. Translation: AAB40799.1.
U00096 Genomic DNA. Translation: ABD18642.1.
AP009048 Genomic DNA. Translation: BAA35228.1.
PIRiS14413.
RefSeqiWP_000460431.1. NZ_LN832404.1.
YP_588442.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABD18642; ABD18642; b4512.
BAA35228; BAA35228; BAA35228.
GeneIDi949021.
KEGGiecj:JW0591.
eco:b4512.
PATRICi32116374. VBIEscCol129921_0627.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X52904 Genomic DNA. Translation: CAA37088.1.
U82598 Genomic DNA. Translation: AAB40799.1.
U00096 Genomic DNA. Translation: ABD18642.1.
AP009048 Genomic DNA. Translation: BAA35228.1.
PIRiS14413.
RefSeqiWP_000460431.1. NZ_LN832404.1.
YP_588442.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP0AAS9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260983. 4 interactions.
IntActiP0AAS9. 8 interactions.
STRINGi511145.b4512.

Proteomic databases

PaxDbiP0AAS9.
PRIDEiP0AAS9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD18642; ABD18642; b4512.
BAA35228; BAA35228; BAA35228.
GeneIDi949021.
KEGGiecj:JW0591.
eco:b4512.
PATRICi32116374. VBIEscCol129921_0627.

Organism-specific databases

EchoBASEiEB1098.
EcoGeneiEG11107. ybdD.

Phylogenomic databases

eggNOGiENOG4105VCD. Bacteria.
COG2879. LUCA.
HOGENOMiHOG000239011.
InParanoidiP0AAS9.
OMAiMDYKTFF.
OrthoDBiEOG6M9F3Z.
PhylomeDBiP0AAS9.

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2660.
ECOL316407:JW0591-MONOMER.

Miscellaneous databases

PROiP0AAS9.

Family and domain databases

InterProiIPR007423. DUF466.
[Graphical view]
PfamiPF04328. DUF466. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular and functional characterization of a carbon starvation gene of Escherichia coli."
    Schultz J.E., Matin A.
    J. Mol. Biol. 218:129-140(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBDD_ECOLI
AccessioniPrimary (citable) accession number: P0AAS9
Secondary accession number(s): P23518, Q2EEQ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 20, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.