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Protein

Uncharacterized protein YbcJ

Gene

ybcJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Its structure and the presence of conserved basic residues indicates that it probably binds RNA.

GO - Molecular functioni

  • RNA binding Source: EcoCyc
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12879-MONOMER.
ECOL316407:JW5070-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbcJ
Gene namesi
Name:ybcJ
Ordered Locus Names:b0528, JW5070
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12879. ybcJ.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686491 – 70Uncharacterized protein YbcJAdd BLAST70

Proteomic databases

PaxDbiP0AAS7.
PRIDEiP0AAS7.

Interactioni

Protein-protein interaction databases

BioGridi4262818. 6 interactors.
DIPiDIP-47878N.
IntActiP0AAS7. 48 interactors.
MINTiMINT-1218447.
STRINGi511145.b0528.

Structurei

Secondary structure

170
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 5Combined sources3
Helixi14 – 21Combined sources8
Beta strandi25 – 28Combined sources4
Helixi32 – 39Combined sources8
Beta strandi55 – 61Combined sources7
Beta strandi64 – 69Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1P9KNMR-A1-70[»]
ProteinModelPortaliP0AAS7.
SMRiP0AAS7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AAS7.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 68S4 RNA-bindingPROSITE-ProRule annotationAdd BLAST57

Sequence similaritiesi

Contains 1 S4 RNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105WQ3. Bacteria.
COG2501. LUCA.
HOGENOMiHOG000074028.
InParanoidiP0AAS7.
KOiK14761.
OMAiQGWSESG.
PhylomeDBiP0AAS7.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR002942. S4_RNA-bd.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATFSLGKHP HVELCDLLKL EGWSESGAQA KIAIAEGQVK VDGAVETRKR
60 70
CKIVAGQTVS FAGHSVQVVA
Length:70
Mass (Da):7,390
Last modified:October 11, 2005 - v1
Checksum:i741FD495A73B08BA
GO

Sequence cautioni

The sequence AAB40281 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence described in differs from that shown. Reason: Frameshift at position 26.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10588 Genomic DNA. No translation available.
U82664 Genomic DNA. Translation: AAB40281.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73630.2.
AP009048 Genomic DNA. Translation: BAE76305.1.
M74789 Genomic DNA. No translation available.
PIRiG64784.
RefSeqiNP_415061.2. NC_000913.3.
WP_000190288.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73630; AAC73630; b0528.
BAE76305; BAE76305; BAE76305.
GeneIDi945158.
KEGGiecj:JW5070.
eco:b0528.
PATRICi32116216. VBIEscCol129921_0549.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10588 Genomic DNA. No translation available.
U82664 Genomic DNA. Translation: AAB40281.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73630.2.
AP009048 Genomic DNA. Translation: BAE76305.1.
M74789 Genomic DNA. No translation available.
PIRiG64784.
RefSeqiNP_415061.2. NC_000913.3.
WP_000190288.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1P9KNMR-A1-70[»]
ProteinModelPortaliP0AAS7.
SMRiP0AAS7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262818. 6 interactors.
DIPiDIP-47878N.
IntActiP0AAS7. 48 interactors.
MINTiMINT-1218447.
STRINGi511145.b0528.

Proteomic databases

PaxDbiP0AAS7.
PRIDEiP0AAS7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73630; AAC73630; b0528.
BAE76305; BAE76305; BAE76305.
GeneIDi945158.
KEGGiecj:JW5070.
eco:b0528.
PATRICi32116216. VBIEscCol129921_0549.

Organism-specific databases

EchoBASEiEB2717.
EcoGeneiEG12879. ybcJ.

Phylogenomic databases

eggNOGiENOG4105WQ3. Bacteria.
COG2501. LUCA.
HOGENOMiHOG000074028.
InParanoidiP0AAS7.
KOiK14761.
OMAiQGWSESG.
PhylomeDBiP0AAS7.

Enzyme and pathway databases

BioCyciEcoCyc:EG12879-MONOMER.
ECOL316407:JW5070-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0AAS7.
PROiP0AAS7.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR002942. S4_RNA-bd.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBCJ_ECOLI
AccessioniPrimary (citable) accession number: P0AAS7
Secondary accession number(s): P45571, P77661, Q2MBQ1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 2, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Although the solution structure of this protein has been solved it has not been shown to be expressed in E.coli.Curated

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.