Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane protein YbbJ

Gene

ybbJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6264-MONOMER.
ECOL316407:JW5065-MONOMER.
RETL1328306-WGS:GSTH-3626-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbbJ
Gene namesi
Name:ybbJ
Ordered Locus Names:b0488, JW5065
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13257. ybbJ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei1 – 2121HelicalSequence analysisAdd
BLAST
Topological domaini22 – 3110CytoplasmicSequence analysis
Transmembranei32 – 5221HelicalSequence analysisAdd
BLAST
Topological domaini53 – 542PeriplasmicSequence analysis
Transmembranei55 – 7521HelicalSequence analysisAdd
BLAST
Topological domaini76 – 15277CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 152152Inner membrane protein YbbJPRO_0000168638Add
BLAST

Proteomic databases

PaxDbiP0AAS3.

Interactioni

Protein-protein interaction databases

BioGridi4261106. 7 interactions.
STRINGi511145.b0488.

Structurei

3D structure databases

ProteinModelPortaliP0AAS3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To M.jannaschii MJ0826.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105G5H. Bacteria.
COG1585. LUCA.
HOGENOMiHOG000245405.
InParanoidiP0AAS3.
KOiK07340.
OMAiPGVFLFW.
OrthoDBiEOG62RSDJ.
PhylomeDBiP0AAS3.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR002810. NfeD-like_C.
[Graphical view]
PfamiPF01957. NfeD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAS3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMELMVVHPH IFWLSLGGLL LAAEMLGGNG YLLWSGVAAV ITGLVVWLVP
60 70 80 90 100
LGWEWQGVMF AILTLLAAWL WWKWLSRRVR EQKHSDSHLN QRGQQLIGRR
110 120 130 140 150
FVLESPLVNG RGHMRVGDSS WPVSASEDLG AGTHVEVIAI EGITLHIRAV

SS
Length:152
Mass (Da):16,939
Last modified:June 26, 2007 - v2
Checksum:iFDD3930F4D4FE76E
GO

Sequence cautioni

The sequence BAE76267.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40242.1.
U00096 Genomic DNA. Translation: AAC73590.2.
AP009048 Genomic DNA. Translation: BAE76267.1. Different initiation.
PIRiG64779.
RefSeqiNP_415021.2. NC_000913.3.
WP_000970323.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73590; AAC73590; b0488.
BAE76267; BAE76267; BAE76267.
GeneIDi945126.
KEGGiecj:JW5065.
eco:b0488.
PATRICi32116135. VBIEscCol129921_0509.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40242.1.
U00096 Genomic DNA. Translation: AAC73590.2.
AP009048 Genomic DNA. Translation: BAE76267.1. Different initiation.
PIRiG64779.
RefSeqiNP_415021.2. NC_000913.3.
WP_000970323.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAS3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261106. 7 interactions.
STRINGi511145.b0488.

Proteomic databases

PaxDbiP0AAS3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73590; AAC73590; b0488.
BAE76267; BAE76267; BAE76267.
GeneIDi945126.
KEGGiecj:JW5065.
eco:b0488.
PATRICi32116135. VBIEscCol129921_0509.

Organism-specific databases

EchoBASEiEB3045.
EcoGeneiEG13257. ybbJ.

Phylogenomic databases

eggNOGiENOG4105G5H. Bacteria.
COG1585. LUCA.
HOGENOMiHOG000245405.
InParanoidiP0AAS3.
KOiK07340.
OMAiPGVFLFW.
OrthoDBiEOG62RSDJ.
PhylomeDBiP0AAS3.

Enzyme and pathway databases

BioCyciEcoCyc:G6264-MONOMER.
ECOL316407:JW5065-MONOMER.
RETL1328306-WGS:GSTH-3626-MONOMER.

Miscellaneous databases

PROiP0AAS3.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR002810. NfeD-like_C.
[Graphical view]
PfamiPF01957. NfeD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYBBJ_ECOLI
AccessioniPrimary (citable) accession number: P0AAS3
Secondary accession number(s): P75709, P77124, Q2MBT9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: June 26, 2007
Last modified: January 20, 2016
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.