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Protein

Inner membrane protein YbaN

Gene

ybaN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12843-MONOMER.
ECOL316407:JW0457-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbaN
Gene namesi
Name:ybaN
Ordered Locus Names:b0468, JW0457
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12843. ybaN.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 66CytoplasmicSequence analysis
Transmembranei7 – 2620HelicalSequence analysisAdd
BLAST
Topological domaini27 – 4519PeriplasmicSequence analysisAdd
BLAST
Transmembranei46 – 6318HelicalSequence analysisAdd
BLAST
Topological domaini64 – 7411CytoplasmicSequence analysisAdd
BLAST
Transmembranei75 – 9218HelicalSequence analysisAdd
BLAST
Topological domaini93 – 953PeriplasmicSequence analysis
Transmembranei96 – 11823HelicalSequence analysisAdd
BLAST
Topological domaini119 – 1257CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 125125Inner membrane protein YbaNPRO_0000168625Add
BLAST

Proteomic databases

PaxDbiP0AAR5.

Interactioni

Protein-protein interaction databases

BioGridi4261713. 10 interactions.
STRINGi511145.b0468.

Structurei

3D structure databases

ProteinModelPortaliP0AAR5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105WD1. Bacteria.
COG2832. LUCA.
HOGENOMiHOG000277594.
InParanoidiP0AAR5.
KOiK09790.
OMAiGSYLRHW.
OrthoDBiEOG6KMB9V.
PhylomeDBiP0AAR5.

Family and domain databases

InterProiIPR007401. DUF454.
[Graphical view]
PfamiPF04304. DUF454. 1 hit.
[Graphical view]
PIRSFiPIRSF016789. DUF454. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AAR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRIILIIIG WLAVVLGTLG VVLPVLPTTP FILLAAWCFA RSSPRFHAWL
60 70 80 90 100
LYRSWFGSYL RFWQKHHAMP RGVKPRAILL ILLTFAISLW FVQMPWVRIM
110 120
LLVILACLLF YMWRIPVIDE KQEKH
Length:125
Mass (Da):14,770
Last modified:October 11, 2005 - v1
Checksum:iF12848BDD9330764
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti70 – 701P → R (PubMed:1856227).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40222.1.
U00096 Genomic DNA. Translation: AAC73570.1.
AP009048 Genomic DNA. Translation: BAE76247.1.
D13958 Genomic DNA. No translation available.
U38660 Genomic DNA. Translation: AAA81028.1.
PIRiC64777.
RefSeqiNP_415001.1. NC_000913.3.
WP_001188905.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73570; AAC73570; b0468.
BAE76247; BAE76247; BAE76247.
GeneIDi945558.
KEGGiecj:JW0457.
eco:b0468.
PATRICi32116091. VBIEscCol129921_0487.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40222.1.
U00096 Genomic DNA. Translation: AAC73570.1.
AP009048 Genomic DNA. Translation: BAE76247.1.
D13958 Genomic DNA. No translation available.
U38660 Genomic DNA. Translation: AAA81028.1.
PIRiC64777.
RefSeqiNP_415001.1. NC_000913.3.
WP_001188905.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAR5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261713. 10 interactions.
STRINGi511145.b0468.

Proteomic databases

PaxDbiP0AAR5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73570; AAC73570; b0468.
BAE76247; BAE76247; BAE76247.
GeneIDi945558.
KEGGiecj:JW0457.
eco:b0468.
PATRICi32116091. VBIEscCol129921_0487.

Organism-specific databases

EchoBASEiEB2692.
EcoGeneiEG12843. ybaN.

Phylogenomic databases

eggNOGiENOG4105WD1. Bacteria.
COG2832. LUCA.
HOGENOMiHOG000277594.
InParanoidiP0AAR5.
KOiK09790.
OMAiGSYLRHW.
OrthoDBiEOG6KMB9V.
PhylomeDBiP0AAR5.

Enzyme and pathway databases

BioCyciEcoCyc:EG12843-MONOMER.
ECOL316407:JW0457-MONOMER.

Miscellaneous databases

PROiP0AAR5.

Family and domain databases

InterProiIPR007401. DUF454.
[Graphical view]
PfamiPF04304. DUF454. 1 hit.
[Graphical view]
PIRSFiPIRSF016789. DUF454. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "The priB and priC replication proteins of Escherichia coli. Genes, DNA sequence, overexpression, and purification."
    Zavitz K.H., Digate R.J., Marians K.J.
    J. Biol. Chem. 266:13988-13995(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-115.
    Strain: K12.
  5. Robison K., Estep P.E., O'Keeffe T., Church G.M.
    Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 95-125.
    Strain: K12 / EMG2.
  6. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.
  7. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYBAN_ECOLI
AccessioniPrimary (citable) accession number: P0AAR5
Secondary accession number(s): P45808, P77478, Q2MBV9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 20, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.