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Protein

Uncharacterized protein YbaA

Gene

ybaA

Organism
Shigella flexneri
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbaA
Gene namesi
Name:ybaA
Ordered Locus Names:SF0401, S0408
OrganismiShigella flexneri
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 117117Uncharacterized protein YbaAPRO_0000168615Add
BLAST

Proteomic databases

PaxDbiP0AAQ9.

Interactioni

Protein-protein interaction databases

STRINGi198214.SF0401.

Structurei

Secondary structure

1
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 1210Combined sources
Helixi13 – 153Combined sources
Helixi16 – 3217Combined sources
Beta strandi36 – 4510Combined sources
Helixi54 – 574Combined sources
Beta strandi64 – 7411Combined sources
Helixi76 – 8712Combined sources
Helixi90 – 945Combined sources
Turni103 – 1053Combined sources
Beta strandi107 – 11711Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OKQX-ray1.80A/B1-117[»]
ProteinModelPortaliP0AAQ9.
SMRiP0AAQ9. Positions 1-117.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AAQ9.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105KCV. Bacteria.
COG5507. LUCA.
HOGENOMiHOG000117599.
OMAiECIGDDV.
OrthoDBiEOG68M4J5.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR009874. DUF1428.
[Graphical view]
PfamiPF07237. DUF1428. 1 hit.
[Graphical view]
PIRSFiPIRSF007028. UCP007028. 1 hit.
SUPFAMiSSF54909. SSF54909. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AAQ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYVDGFVVA VPADKKDAYR EMAAKAAPLF KEFGALRIVE CWASDVPDGK
60 70 80 90 100
VTDFRMAVKA EENEEVVFSW IEYPSKEVRD AANQKMMSDP RMKEFGESMP
110
FDGKRMIYGG FESIIDE
Length:117
Mass (Da):13,318
Last modified:October 11, 2005 - v1
Checksum:i5E320D62A2A93FF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42057.1.
AE014073 Genomic DNA. Translation: AAP15934.1.
RefSeqiNP_706350.1. NC_004337.2.
WP_000878140.1. NZ_LM651928.1.

Genome annotation databases

EnsemblBacteriaiAAN42057; AAN42057; SF0401.
AAP15934; AAP15934; S0408.
GeneIDi1027736.
KEGGisfl:SF0401.
sfx:S0408.
PATRICi18701833. VBIShiFle31049_0449.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42057.1.
AE014073 Genomic DNA. Translation: AAP15934.1.
RefSeqiNP_706350.1. NC_004337.2.
WP_000878140.1. NZ_LM651928.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OKQX-ray1.80A/B1-117[»]
ProteinModelPortaliP0AAQ9.
SMRiP0AAQ9. Positions 1-117.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198214.SF0401.

Proteomic databases

PaxDbiP0AAQ9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN42057; AAN42057; SF0401.
AAP15934; AAP15934; S0408.
GeneIDi1027736.
KEGGisfl:SF0401.
sfx:S0408.
PATRICi18701833. VBIShiFle31049_0449.

Phylogenomic databases

eggNOGiENOG4105KCV. Bacteria.
COG5507. LUCA.
HOGENOMiHOG000117599.
OMAiECIGDDV.
OrthoDBiEOG68M4J5.

Miscellaneous databases

EvolutionaryTraceiP0AAQ9.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR009874. DUF1428.
[Graphical view]
PfamiPF07237. DUF1428. 1 hit.
[Graphical view]
PIRSFiPIRSF007028. UCP007028. 1 hit.
SUPFAMiSSF54909. SSF54909. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157."
    Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J., Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L., Xue Y.
    , Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H., Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.
    Nucleic Acids Res. 30:4432-4441(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 301 / Serotype 2a.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700930 / 2457T / Serotype 2a.
  3. "Crystal structure of unknown conserved ybaA protein from Shigella flexneri."
    Midwest center for structural genomics (MCSG)
    Submitted (FEB-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS).

Entry informationi

Entry nameiYBAA_SHIFL
AccessioniPrimary (citable) accession number: P0AAQ9
Secondary accession number(s): P09161
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 11, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.