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Protein

Uncharacterized protein YbaA

Gene

ybaA

Organism
Shigella flexneri
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbaA
Gene namesi
Name:ybaA
Ordered Locus Names:SF0401, S0408
OrganismiShigella flexneri
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686151 – 117Uncharacterized protein YbaAAdd BLAST117

Proteomic databases

PaxDbiP0AAQ9.

Interactioni

Protein-protein interaction databases

STRINGi198214.SF0401.

Structurei

Secondary structure

1117
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 12Combined sources10
Helixi13 – 15Combined sources3
Helixi16 – 32Combined sources17
Beta strandi36 – 45Combined sources10
Helixi54 – 57Combined sources4
Beta strandi64 – 74Combined sources11
Helixi76 – 87Combined sources12
Helixi90 – 94Combined sources5
Turni103 – 105Combined sources3
Beta strandi107 – 117Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2OKQX-ray1.80A/B1-117[»]
ProteinModelPortaliP0AAQ9.
SMRiP0AAQ9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AAQ9.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105KCV. Bacteria.
COG5507. LUCA.
HOGENOMiHOG000117599.
OMAiECIGDDV.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR009874. DUF1428.
[Graphical view]
PfamiPF07237. DUF1428. 1 hit.
[Graphical view]
PIRSFiPIRSF007028. UCP007028. 1 hit.
SUPFAMiSSF54909. SSF54909. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AAQ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYVDGFVVA VPADKKDAYR EMAAKAAPLF KEFGALRIVE CWASDVPDGK
60 70 80 90 100
VTDFRMAVKA EENEEVVFSW IEYPSKEVRD AANQKMMSDP RMKEFGESMP
110
FDGKRMIYGG FESIIDE
Length:117
Mass (Da):13,318
Last modified:October 11, 2005 - v1
Checksum:i5E320D62A2A93FF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42057.1.
AE014073 Genomic DNA. Translation: AAP15934.1.
RefSeqiNP_706350.1. NC_004337.2.
WP_000878140.1. NZ_LVJC01000020.1.

Genome annotation databases

EnsemblBacteriaiAAN42057; AAN42057; SF0401.
AAP15934; AAP15934; S0408.
GeneIDi1027736.
KEGGisfl:SF0401.
sft:NCTC1_00414.
sfx:S0408.
PATRICi18701833. VBIShiFle31049_0449.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42057.1.
AE014073 Genomic DNA. Translation: AAP15934.1.
RefSeqiNP_706350.1. NC_004337.2.
WP_000878140.1. NZ_LVJC01000020.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2OKQX-ray1.80A/B1-117[»]
ProteinModelPortaliP0AAQ9.
SMRiP0AAQ9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198214.SF0401.

Proteomic databases

PaxDbiP0AAQ9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN42057; AAN42057; SF0401.
AAP15934; AAP15934; S0408.
GeneIDi1027736.
KEGGisfl:SF0401.
sft:NCTC1_00414.
sfx:S0408.
PATRICi18701833. VBIShiFle31049_0449.

Phylogenomic databases

eggNOGiENOG4105KCV. Bacteria.
COG5507. LUCA.
HOGENOMiHOG000117599.
OMAiECIGDDV.

Miscellaneous databases

EvolutionaryTraceiP0AAQ9.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR009874. DUF1428.
[Graphical view]
PfamiPF07237. DUF1428. 1 hit.
[Graphical view]
PIRSFiPIRSF007028. UCP007028. 1 hit.
SUPFAMiSSF54909. SSF54909. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBAA_SHIFL
AccessioniPrimary (citable) accession number: P0AAQ9
Secondary accession number(s): P09161
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 2, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.