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Protein

Uncharacterized ferredoxin-like protein YdhY

Gene

ydhY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi68 – 681Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi71 – 711Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi74 – 741Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi78 – 781Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi123 – 1231Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi126 – 1261Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi131 – 1311Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi135 – 1351Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi156 – 1561Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi159 – 1591Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi162 – 1621Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi166 – 1661Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi183 – 1831Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi186 – 1861Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi189 – 1891Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi193 – 1931Iron-sulfur 1 (4Fe-4S)By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6902-MONOMER.
ECOL316407:JW1664-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ferredoxin-like protein YdhY
Gene namesi
Name:ydhY
Ordered Locus Names:b1674, JW1664
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13959. ydhY.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 208208Uncharacterized ferredoxin-like protein YdhYPRO_0000159297Add
BLAST

Proteomic databases

PaxDbiP0AAL6.

Expressioni

Inductioni

Up-regulated by the oxygen-responsive transcription factor FNR under anaerobic conditions. Repressed in the presence of nitrate or nitrite via the two-component systems NarXL and NarPQ, respectively.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4259669. 17 interactions.
IntActiP0AAL6. 5 interactions.
STRINGi511145.b1674.

Structurei

3D structure databases

ProteinModelPortaliP0AAL6.
SMRiP0AAL6. Positions 56-195.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini59 – 88304Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd
BLAST
Domaini114 – 145324Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd
BLAST
Domaini147 – 176304Fe-4S ferredoxin-type 3PROSITE-ProRule annotationAdd
BLAST
Domaini174 – 203304Fe-4S ferredoxin-type 4PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 4 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4108PU5. Bacteria.
COG0437. LUCA.
HOGENOMiHOG000012365.
InParanoidiP0AAL6.
OMAiNQVERPI.
OrthoDBiEOG6XSZQF.
PhylomeDBiP0AAL6.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13247. Fer4_11. 1 hit.
PF12800. Fer4_4. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 2 hits.
PS51379. 4FE4S_FER_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNPVDRPLLD IGLTRLEFLR ISGKGLAGLT IAPALLSLLG CKQEDIDSGT
60 70 80 90 100
VGLINTPKGV LVTQRARCTG CHRCEISCTN FNDGSVGTFF SRIKIHRNYF
110 120 130 140 150
FGDNGVGSGG GLYGDLNYTA DTCRQCKEPQ CMNVCPIGAI TWQQKEGCIT
160 170 180 190 200
VDHKRCIGCS ACTTACPWMM ATVNTESKKS SKCVLCGECA NACPTGALKI

IEWKDITV
Length:208
Mass (Da):22,367
Last modified:October 11, 2005 - v1
Checksum:i7DA40987D6BBF918
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47950.1.
U00096 Genomic DNA. Translation: AAC74744.1.
AP009048 Genomic DNA. Translation: BAA15444.1.
PIRiB64925.
RefSeqiNP_416189.1. NC_000913.3.
WP_001070230.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74744; AAC74744; b1674.
BAA15444; BAA15444; BAA15444.
GeneIDi948749.
KEGGiecj:JW1664.
eco:b1674.
PATRICi32118654. VBIEscCol129921_1745.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47950.1.
U00096 Genomic DNA. Translation: AAC74744.1.
AP009048 Genomic DNA. Translation: BAA15444.1.
PIRiB64925.
RefSeqiNP_416189.1. NC_000913.3.
WP_001070230.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAL6.
SMRiP0AAL6. Positions 56-195.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259669. 17 interactions.
IntActiP0AAL6. 5 interactions.
STRINGi511145.b1674.

Proteomic databases

PaxDbiP0AAL6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74744; AAC74744; b1674.
BAA15444; BAA15444; BAA15444.
GeneIDi948749.
KEGGiecj:JW1664.
eco:b1674.
PATRICi32118654. VBIEscCol129921_1745.

Organism-specific databases

EchoBASEiEB3717.
EcoGeneiEG13959. ydhY.

Phylogenomic databases

eggNOGiENOG4108PU5. Bacteria.
COG0437. LUCA.
HOGENOMiHOG000012365.
InParanoidiP0AAL6.
OMAiNQVERPI.
OrthoDBiEOG6XSZQF.
PhylomeDBiP0AAL6.

Enzyme and pathway databases

BioCyciEcoCyc:G6902-MONOMER.
ECOL316407:JW1664-MONOMER.

Miscellaneous databases

PROiP0AAL6.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13247. Fer4_11. 1 hit.
PF12800. Fer4_4. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 2 hits.
PS51379. 4FE4S_FER_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12."
    Hensel M., Shea J.E., Baeumler A.J., Gleeson C., Blattner F.R., Holden D.W.
    J. Bacteriol. 179:1105-1111(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Characterization of the Escherichia coli K-12 ydhYVWXUT operon: regulation by FNR, NarL and NarP."
    Partridge J.D., Browning D.F., Xu M., Newnham L.J., Scott C., Roberts R.E., Poole R.K., Green J.
    Microbiology 154:608-618(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION.
    Strain: K12.

Entry informationi

Entry nameiYDHY_ECOLI
AccessioniPrimary (citable) accession number: P0AAL6
Secondary accession number(s): P77186
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 8, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.