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Protein

Uncharacterized ferredoxin-like protein YdhY

Gene

ydhY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi68Iron-sulfur 1 (4Fe-4S)By similarity1
Metal bindingi71Iron-sulfur 1 (4Fe-4S)By similarity1
Metal bindingi74Iron-sulfur 1 (4Fe-4S)By similarity1
Metal bindingi78Iron-sulfur 2 (4Fe-4S)By similarity1
Metal bindingi123Iron-sulfur 3 (4Fe-4S)By similarity1
Metal bindingi126Iron-sulfur 3 (4Fe-4S)By similarity1
Metal bindingi131Iron-sulfur 3 (4Fe-4S)By similarity1
Metal bindingi135Iron-sulfur 4 (4Fe-4S)By similarity1
Metal bindingi156Iron-sulfur 4 (4Fe-4S)By similarity1
Metal bindingi159Iron-sulfur 4 (4Fe-4S)By similarity1
Metal bindingi162Iron-sulfur 4 (4Fe-4S)By similarity1
Metal bindingi166Iron-sulfur 3 (4Fe-4S)By similarity1
Metal bindingi183Iron-sulfur 2 (4Fe-4S)By similarity1
Metal bindingi186Iron-sulfur 2 (4Fe-4S)By similarity1
Metal bindingi189Iron-sulfur 2 (4Fe-4S)By similarity1
Metal bindingi193Iron-sulfur 1 (4Fe-4S)By similarity1

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6902-MONOMER.
ECOL316407:JW1664-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ferredoxin-like protein YdhY
Gene namesi
Name:ydhY
Ordered Locus Names:b1674, JW1664
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13959. ydhY.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001592971 – 208Uncharacterized ferredoxin-like protein YdhYAdd BLAST208

Proteomic databases

PaxDbiP0AAL6.
PRIDEiP0AAL6.

Expressioni

Inductioni

Up-regulated by the oxygen-responsive transcription factor FNR under anaerobic conditions. Repressed in the presence of nitrate or nitrite via the two-component systems NarXL and NarPQ, respectively.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4259669. 17 interactors.
IntActiP0AAL6. 5 interactors.
STRINGi511145.b1674.

Structurei

3D structure databases

ProteinModelPortaliP0AAL6.
SMRiP0AAL6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini59 – 884Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd BLAST30
Domaini114 – 1454Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd BLAST32
Domaini147 – 1764Fe-4S ferredoxin-type 3PROSITE-ProRule annotationAdd BLAST30
Domaini174 – 2034Fe-4S ferredoxin-type 4PROSITE-ProRule annotationAdd BLAST30

Sequence similaritiesi

Contains 4 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4108PU5. Bacteria.
COG0437. LUCA.
HOGENOMiHOG000012365.
InParanoidiP0AAL6.
OMAiNQVERPI.
PhylomeDBiP0AAL6.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13247. Fer4_11. 1 hit.
PF12800. Fer4_4. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 2 hits.
PS51379. 4FE4S_FER_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNPVDRPLLD IGLTRLEFLR ISGKGLAGLT IAPALLSLLG CKQEDIDSGT
60 70 80 90 100
VGLINTPKGV LVTQRARCTG CHRCEISCTN FNDGSVGTFF SRIKIHRNYF
110 120 130 140 150
FGDNGVGSGG GLYGDLNYTA DTCRQCKEPQ CMNVCPIGAI TWQQKEGCIT
160 170 180 190 200
VDHKRCIGCS ACTTACPWMM ATVNTESKKS SKCVLCGECA NACPTGALKI

IEWKDITV
Length:208
Mass (Da):22,367
Last modified:October 11, 2005 - v1
Checksum:i7DA40987D6BBF918
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47950.1.
U00096 Genomic DNA. Translation: AAC74744.1.
AP009048 Genomic DNA. Translation: BAA15444.1.
PIRiB64925.
RefSeqiNP_416189.1. NC_000913.3.
WP_001070230.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74744; AAC74744; b1674.
BAA15444; BAA15444; BAA15444.
GeneIDi948749.
KEGGiecj:JW1664.
eco:b1674.
PATRICi32118654. VBIEscCol129921_1745.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47950.1.
U00096 Genomic DNA. Translation: AAC74744.1.
AP009048 Genomic DNA. Translation: BAA15444.1.
PIRiB64925.
RefSeqiNP_416189.1. NC_000913.3.
WP_001070230.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAL6.
SMRiP0AAL6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259669. 17 interactors.
IntActiP0AAL6. 5 interactors.
STRINGi511145.b1674.

Proteomic databases

PaxDbiP0AAL6.
PRIDEiP0AAL6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74744; AAC74744; b1674.
BAA15444; BAA15444; BAA15444.
GeneIDi948749.
KEGGiecj:JW1664.
eco:b1674.
PATRICi32118654. VBIEscCol129921_1745.

Organism-specific databases

EchoBASEiEB3717.
EcoGeneiEG13959. ydhY.

Phylogenomic databases

eggNOGiENOG4108PU5. Bacteria.
COG0437. LUCA.
HOGENOMiHOG000012365.
InParanoidiP0AAL6.
OMAiNQVERPI.
PhylomeDBiP0AAL6.

Enzyme and pathway databases

BioCyciEcoCyc:G6902-MONOMER.
ECOL316407:JW1664-MONOMER.

Miscellaneous databases

PROiP0AAL6.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13247. Fer4_11. 1 hit.
PF12800. Fer4_4. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 2 hits.
PS51379. 4FE4S_FER_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDHY_ECOLI
AccessioniPrimary (citable) accession number: P0AAL6
Secondary accession number(s): P77186
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 2, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.