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Protein

Ferredoxin-type protein NapF

Gene

napF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Involved in electron transfer.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi37 – 371Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi40 – 401Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi43 – 431Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi47 – 471Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi69 – 691Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi72 – 721Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi75 – 751Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi79 – 791Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi141 – 1411Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi144 – 1441Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi147 – 1471Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi151 – 1511Iron-sulfur 3 (4Fe-4S)By similarity

GO - Molecular functioni

GO - Biological processi

  • oxidation-reduction process Source: UniProtKB-KW
  • response to oxidative stress Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:NAPF-MONOMER.
ECOL316407:JW2196-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin-type protein NapF
Gene namesi
Name:napF
Synonyms:yojG
Ordered Locus Names:b2208, JW2196
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12068. napF.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 164164Ferredoxin-type protein NapFPRO_0000159275Add
BLAST

Proteomic databases

PaxDbiP0AAL0.

Interactioni

Protein-protein interaction databases

BioGridi4262219. 7 interactions.
STRINGi511145.b2208.

Structurei

3D structure databases

ProteinModelPortaliP0AAL0.
SMRiP0AAL0. Positions 67-155.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 57304Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd
BLAST
Domaini58 – 89324Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd
BLAST
Domaini132 – 161304Fe-4S ferredoxin-type 3PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 3 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4108ZNS. Bacteria.
COG1145. LUCA.
HOGENOMiHOG000275477.
InParanoidiP0AAL0.
KOiK02572.
OMAiFSCKDPC.
OrthoDBiEOG6KMB9T.
PhylomeDBiP0AAL0.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR004496. NapF.
[Graphical view]
PfamiPF00037. Fer4. 1 hit.
PF12800. Fer4_4. 1 hit.
PF13187. Fer4_9. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00402. napF. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 3 hits.
PS51379. 4FE4S_FER_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAL0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIDASRRGI LTGRWRKASN GIRPPWSGDE SHFLTHCTRC DACINACENN
60 70 80 90 100
ILQRGAGGYP SVNFKNNECS FCYACAQACP ESLFSPRHTR AWDLQFTIGD
110 120 130 140 150
ACLAYQSVEC RRCQDSCEPM AIIFRPTLSG IYQPQLNSQL CNGCGACAAS
160
CPVSAITAEY LHAH
Length:164
Mass (Da):18,047
Last modified:October 11, 2005 - v1
Checksum:i3832B3D78805FAC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00008 Genomic DNA. Translation: AAA16401.1.
U00096 Genomic DNA. Translation: AAC75268.1.
AP009048 Genomic DNA. Translation: BAA15991.1.
PIRiF64990.
RefSeqiNP_416712.1. NC_000913.3.
WP_000686723.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75268; AAC75268; b2208.
BAA15991; BAA15991; BAA15991.
GeneIDi946813.
KEGGiecj:JW2196.
eco:b2208.
PATRICi32119775. VBIEscCol129921_2297.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00008 Genomic DNA. Translation: AAA16401.1.
U00096 Genomic DNA. Translation: AAC75268.1.
AP009048 Genomic DNA. Translation: BAA15991.1.
PIRiF64990.
RefSeqiNP_416712.1. NC_000913.3.
WP_000686723.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAL0.
SMRiP0AAL0. Positions 67-155.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262219. 7 interactions.
STRINGi511145.b2208.

Proteomic databases

PaxDbiP0AAL0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75268; AAC75268; b2208.
BAA15991; BAA15991; BAA15991.
GeneIDi946813.
KEGGiecj:JW2196.
eco:b2208.
PATRICi32119775. VBIEscCol129921_2297.

Organism-specific databases

EchoBASEiEB1995.
EcoGeneiEG12068. napF.

Phylogenomic databases

eggNOGiENOG4108ZNS. Bacteria.
COG1145. LUCA.
HOGENOMiHOG000275477.
InParanoidiP0AAL0.
KOiK02572.
OMAiFSCKDPC.
OrthoDBiEOG6KMB9T.
PhylomeDBiP0AAL0.

Enzyme and pathway databases

BioCyciEcoCyc:NAPF-MONOMER.
ECOL316407:JW2196-MONOMER.

Miscellaneous databases

PROiP0AAL0.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR004496. NapF.
[Graphical view]
PfamiPF00037. Fer4. 1 hit.
PF12800. Fer4_4. 1 hit.
PF13187. Fer4_9. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00402. napF. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 3 hits.
PS51379. 4FE4S_FER_2. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Automated multiplex sequencing of the E.coli genome."
    Richterich P., Lakey N., Gryan G., Jaehn L., Mintz L., Robison K., Church G.M.
    Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / BHB2600.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiNAPF_ECOLI
AccessioniPrimary (citable) accession number: P0AAL0
Secondary accession number(s): P33939
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2005
Last sequence update: October 11, 2005
Last modified: May 11, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.