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Protein

Uncharacterized protein YmcE

Gene

ymcE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6512-MONOMER.
ECOL316407:JW0975-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmcE
Gene namesi
Name:ymcE
Synonyms:sfa
Ordered Locus Names:b0991, JW0975
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13232. ymcE.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei18 – 3821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7676Uncharacterized protein YmcEPRO_0000097707Add
BLAST

Proteomic databases

PaxDbiP0AAA5.

Expressioni

Inductioni

Transiently induced by cold shock in a PNPase-dependent fashion.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4260048. 6 interactions.
STRINGi511145.b0991.

Structurei

3D structure databases

ProteinModelPortaliP0AAA5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000009722.
OMAiREMAYNI.
OrthoDBiEOG6HQST2.

Family and domain databases

InterProiIPR031853. YmcE_antitoxin.
[Graphical view]
PfamiPF15939. YmcE_antitoxin. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AAA5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRWISQNNI RLPRGAFFIS ALFFFNAVCI VSDNLLIIES FGEMAYNISY
60 70
LTRVPGTNTL LACCCLLRPE EVNSEY
Length:76
Mass (Da):8,727
Last modified:September 13, 2005 - v1
Checksum:i0EF0A35DBB9BABFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U38541 Genomic DNA. Translation: AAC44390.1.
U00096 Genomic DNA. Translation: AAC74076.1.
AP009048 Genomic DNA. Translation: BAA35757.1.
PIRiE64840.
RefSeqiNP_415511.1. NC_000913.3.
WP_001309400.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74076; AAC74076; b0991.
BAA35757; BAA35757; BAA35757.
GeneIDi946951.
KEGGiecj:JW0975.
eco:b0991.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U38541 Genomic DNA. Translation: AAC44390.1.
U00096 Genomic DNA. Translation: AAC74076.1.
AP009048 Genomic DNA. Translation: BAA35757.1.
PIRiE64840.
RefSeqiNP_415511.1. NC_000913.3.
WP_001309400.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AAA5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260048. 6 interactions.
STRINGi511145.b0991.

Proteomic databases

PaxDbiP0AAA5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74076; AAC74076; b0991.
BAA35757; BAA35757; BAA35757.
GeneIDi946951.
KEGGiecj:JW0975.
eco:b0991.

Organism-specific databases

EchoBASEiEB3021.
EcoGeneiEG13232. ymcE.

Phylogenomic databases

HOGENOMiHOG000009722.
OMAiREMAYNI.
OrthoDBiEOG6HQST2.

Enzyme and pathway databases

BioCyciEcoCyc:G6512-MONOMER.
ECOL316407:JW0975-MONOMER.

Miscellaneous databases

PROiP0AAA5.

Family and domain databases

InterProiIPR031853. YmcE_antitoxin.
[Graphical view]
PfamiPF15939. YmcE_antitoxin. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Increased unsaturated fatty acid production associated with a suppressor of the fabA6(Ts) mutation in Escherichia coli."
    Rock C.O., Tsay J.-T., Heath R., Jackowski S.
    J. Bacteriol. 178:5382-5387(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Overexpression of yccL (gnsA) and ydfY (gnsB) increases levels of unsaturated fatty acids and suppresses both the temperature-sensitive fabA6 mutation and cold-sensitive secG null mutation of Escherichia coli."
    Sugai R., Shimizu H., Nishiyama K., Tokuda H.
    J. Bacteriol. 183:5523-5528(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: SHOWS THAT IT IS NOT A SUPPRESSOR OF FABA6(TS) MUTANTS.
  6. "Changes in Escherichia coli transcriptome during acclimatization at low temperature."
    Polissi A., De Laurentis W., Zangrossi S., Briani F., Longhi V., Pesole G., Deho G.
    Res. Microbiol. 154:573-580(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION BY COLD SHOCK.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYMCE_ECOLI
AccessioniPrimary (citable) accession number: P0AAA5
Secondary accession number(s): P52634
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: January 20, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Was originally thought to suppress the temperature-sensitive growth phenotype of fabA6(Ts) mutants.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.