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Protein

Protein YobA

Gene

yobA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi27CopperSequence analysis1
Metal bindingi113CopperSequence analysis1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Copper, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7014-MONOMER.
ECOL316407:JW1830-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YobA
Gene namesi
Name:yobA
Ordered Locus Names:b1841, JW1830
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14029. yobA.

Subcellular locationi

GO - Cellular componenti

  • outer membrane-bounded periplasmic space Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 26Sequence analysisAdd BLAST26
ChainiPRO_000000602827 – 124Protein YobAAdd BLAST98

Proteomic databases

EPDiP0AA57.
PaxDbiP0AA57.
PRIDEiP0AA57.

Interactioni

Protein-protein interaction databases

BioGridi4260360. 12 interactors.
IntActiP0AA57. 5 interactors.
STRINGi511145.b1841.

Structurei

3D structure databases

ProteinModelPortaliP0AA57.
SMRiP0AA57.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CopC family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105FXM. Bacteria.
COG2372. LUCA.
HOGENOMiHOG000127318.
InParanoidiP0AA57.
KOiK07156.
OMAiGHKTKGS.

Family and domain databases

Gene3Di2.60.40.1220. 1 hit.
InterProiIPR007348. CopC_dom.
IPR014755. Cu-Rt/internalin_Ig-like.
IPR014756. Ig_E-set.
[Graphical view]
PfamiPF04234. CopC. 1 hit.
[Graphical view]
SUPFAMiSSF81296. SSF81296. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AA57-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTARSLRY ALAILTTSLV TPSVWAHAHL THQYPAANAQ VTAAPQAITL
60 70 80 90 100
NFSEGVETGF SGAKITGPKN ENIKTLPAKR NEQDQKQLIV PLADSLKPGT
110 120
YTVDWHVVSV DGHKTKGHYT FSVK
Length:124
Mass (Da):13,410
Last modified:September 13, 2005 - v1
Checksum:i567313A425C72AD2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74911.1.
AP009048 Genomic DNA. Translation: BAE76545.1.
PIRiA64946.
RefSeqiNP_416355.1. NC_000913.3.
WP_000168747.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74911; AAC74911; b1841.
BAE76545; BAE76545; BAE76545.
GeneIDi948315.
KEGGiecj:JW1830.
eco:b1841.
PATRICi32119003. VBIEscCol129921_1919.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74911.1.
AP009048 Genomic DNA. Translation: BAE76545.1.
PIRiA64946.
RefSeqiNP_416355.1. NC_000913.3.
WP_000168747.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AA57.
SMRiP0AA57.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260360. 12 interactors.
IntActiP0AA57. 5 interactors.
STRINGi511145.b1841.

Proteomic databases

EPDiP0AA57.
PaxDbiP0AA57.
PRIDEiP0AA57.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74911; AAC74911; b1841.
BAE76545; BAE76545; BAE76545.
GeneIDi948315.
KEGGiecj:JW1830.
eco:b1841.
PATRICi32119003. VBIEscCol129921_1919.

Organism-specific databases

EchoBASEiEB3783.
EcoGeneiEG14029. yobA.

Phylogenomic databases

eggNOGiENOG4105FXM. Bacteria.
COG2372. LUCA.
HOGENOMiHOG000127318.
InParanoidiP0AA57.
KOiK07156.
OMAiGHKTKGS.

Enzyme and pathway databases

BioCyciEcoCyc:G7014-MONOMER.
ECOL316407:JW1830-MONOMER.

Miscellaneous databases

PROiP0AA57.

Family and domain databases

Gene3Di2.60.40.1220. 1 hit.
InterProiIPR007348. CopC_dom.
IPR014755. Cu-Rt/internalin_Ig-like.
IPR014756. Ig_E-set.
[Graphical view]
PfamiPF04234. CopC. 1 hit.
[Graphical view]
SUPFAMiSSF81296. SSF81296. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYOBA_ECOLI
AccessioniPrimary (citable) accession number: P0AA57
Secondary accession number(s): P76279, Q2MB11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.