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Protein

Uncharacterized transporter YfdV

Gene

yfdV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:B2372-MONOMER.
ECOL316407:JW2369-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized transporter YfdV
Gene namesi
Name:yfdV
Ordered Locus Names:b2372, JW2369
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14144. yfdV.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2320HelicalSequence analysisAdd
BLAST
Transmembranei36 – 5318HelicalSequence analysisAdd
BLAST
Transmembranei68 – 9023HelicalSequence analysisAdd
BLAST
Transmembranei97 – 11620HelicalSequence analysisAdd
BLAST
Transmembranei131 – 15323HelicalSequence analysisAdd
BLAST
Transmembranei174 – 19623HelicalSequence analysisAdd
BLAST
Transmembranei200 – 22223HelicalSequence analysisAdd
BLAST
Transmembranei229 – 25123HelicalSequence analysisAdd
BLAST
Transmembranei261 – 28323HelicalSequence analysisAdd
BLAST
Transmembranei290 – 30920HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 314314Uncharacterized transporter YfdVPRO_0000123799Add
BLAST

Proteomic databases

PaxDbiP0AA49.
PRIDEiP0AA49.

Interactioni

Protein-protein interaction databases

BioGridi4259549. 206 interactions.
DIPiDIP-28062N.
IntActiP0AA49. 1 interaction.
STRINGi511145.b2372.

Structurei

3D structure databases

ProteinModelPortaliP0AA49.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108N2Y. Bacteria.
COG0679. LUCA.
HOGENOMiHOG000122890.
InParanoidiP0AA49.
KOiK07088.
OMAiFKKSPQD.
OrthoDBiEOG6GN73W.
PhylomeDBiP0AA49.

Family and domain databases

InterProiIPR004776. Auxin_eff.
[Graphical view]
PfamiPF03547. Mem_trans. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AA49-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTFFIGDLL PIIVIMLLGY FSGRRETFSE DQARAFNKLV LNYALPAALF
60 70 80 90 100
VSITRANREM IFADTRLTLV SLVVIVGCFF FSWFGCYKFF KRTHAEAAVC
110 120 130 140 150
ALIAGSPTIG FLGFAVLDPI YGDSVSTGLV VAIISIIVNA ITIPIGLYLL
160 170 180 190 200
NPSSGADGKK NSNLSALISA AKEPVVWAPV LATILVLVGV KIPAAWDPTF
210 220 230 240 250
NLIAKANSGV AVFAAGLTLA AHKFEFSAEI AYNTFLKLIL MPLALLLVGM
260 270 280 290 300
ACHLNSEHLQ MMVLAGALPP AFSGIIIASR FNVYTRTGTA SLAVSVLGFV
310
VTAPLWIYVS RLVS
Length:314
Mass (Da):33,616
Last modified:September 13, 2005 - v1
Checksum:i5868054ECEBA6079
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75431.1.
AP009048 Genomic DNA. Translation: BAA16243.2.
PIRiA65011.
RefSeqiNP_416873.1. NC_000913.3.
WP_000955028.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75431; AAC75431; b2372.
BAA16243; BAA16243; BAA16243.
GeneIDi949110.
KEGGiecj:JW2369.
eco:b2372.
PATRICi32120123. VBIEscCol129921_2470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75431.1.
AP009048 Genomic DNA. Translation: BAA16243.2.
PIRiA65011.
RefSeqiNP_416873.1. NC_000913.3.
WP_000955028.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AA49.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259549. 206 interactions.
DIPiDIP-28062N.
IntActiP0AA49. 1 interaction.
STRINGi511145.b2372.

Proteomic databases

PaxDbiP0AA49.
PRIDEiP0AA49.

Protocols and materials databases

DNASUi949110.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75431; AAC75431; b2372.
BAA16243; BAA16243; BAA16243.
GeneIDi949110.
KEGGiecj:JW2369.
eco:b2372.
PATRICi32120123. VBIEscCol129921_2470.

Organism-specific databases

EchoBASEiEB3896.
EcoGeneiEG14144. yfdV.

Phylogenomic databases

eggNOGiENOG4108N2Y. Bacteria.
COG0679. LUCA.
HOGENOMiHOG000122890.
InParanoidiP0AA49.
KOiK07088.
OMAiFKKSPQD.
OrthoDBiEOG6GN73W.
PhylomeDBiP0AA49.

Enzyme and pathway databases

BioCyciEcoCyc:B2372-MONOMER.
ECOL316407:JW2369-MONOMER.

Miscellaneous databases

PROiP0AA49.

Family and domain databases

InterProiIPR004776. Auxin_eff.
[Graphical view]
PfamiPF03547. Mem_trans. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], SEQUENCE REVISION.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYFDV_ECOLI
AccessioniPrimary (citable) accession number: P0AA49
Secondary accession number(s): P76519, P76947, P76948
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: January 20, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.