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P0AA31

- YEDF_ECOLI

UniProt

P0AA31 - YEDF_ECOLI

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Protein

UPF0033 protein YedF

Gene
yedF, b1930, JW1915
Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11661-MONOMER.
ECOL316407:JW1915-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0033 protein YedF
Gene namesi
Name:yedF
Ordered Locus Names:b1930, JW1915
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11661. yedF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7777UPF0033 protein YedFPRO_0000159062Add
BLAST

Proteomic databases

PaxDbiP0AA31.

Expressioni

Gene expression databases

GenevestigatoriP0AA31.

Interactioni

Protein-protein interaction databases

IntActiP0AA31. 4 interactions.
STRINGi511145.b1930.

Structurei

Secondary structure

1
77
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 105
Beta strandi16 – 205
Helixi22 – 276
Turni28 – 303
Beta strandi36 – 427
Beta strandi44 – 474
Helixi49 – 579
Beta strandi60 – 667
Beta strandi68 – 769

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1JE3NMR-A1-77[»]
ProteinModelPortaliP0AA31.
SMRiP0AA31. Positions 1-77.

Miscellaneous databases

EvolutionaryTraceiP0AA31.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0033 family.

Phylogenomic databases

eggNOGiCOG0425.
HOGENOMiHOG000259289.
OMAiIISDCPQ.
OrthoDBiEOG6W9XFB.
PhylomeDBiP0AA31.

Family and domain databases

Gene3Di3.30.110.40. 1 hit.
InterProiIPR001455. TusA-like.
[Graphical view]
PfamiPF01206. TusA. 1 hit.
[Graphical view]
SUPFAMiSSF64307. SSF64307. 1 hit.
PROSITEiPS01148. UPF0033. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AA31-1 [UniParc]FASTAAdd to Basket

« Hide

MKNIVPDYRL DMVGEPCPYP AVATLEAMPQ LKKGEILEVV SDCPQSINNI   50
PLDARNHGYT VLDIQQDGPT IRYLIQK 77
Length:77
Mass (Da):8,639
Last modified:September 13, 2005 - v1
Checksum:i40E393E76CC54AB0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L13279 Genomic DNA. Translation: AAA82578.1.
U00096 Genomic DNA. Translation: AAC74997.1.
AP009048 Genomic DNA. Translation: BAA15758.1.
PIRiG64956.
RefSeqiNP_416440.1. NC_000913.3.
YP_490187.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC74997; AAC74997; b1930.
BAA15758; BAA15758; BAA15758.
GeneIDi12932065.
946909.
KEGGiecj:Y75_p1901.
eco:b1930.
PATRICi32119195. VBIEscCol129921_2012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L13279 Genomic DNA. Translation: AAA82578.1 .
U00096 Genomic DNA. Translation: AAC74997.1 .
AP009048 Genomic DNA. Translation: BAA15758.1 .
PIRi G64956.
RefSeqi NP_416440.1. NC_000913.3.
YP_490187.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1JE3 NMR - A 1-77 [» ]
ProteinModelPortali P0AA31.
SMRi P0AA31. Positions 1-77.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P0AA31. 4 interactions.
STRINGi 511145.b1930.

Proteomic databases

PaxDbi P0AA31.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC74997 ; AAC74997 ; b1930 .
BAA15758 ; BAA15758 ; BAA15758 .
GeneIDi 12932065.
946909.
KEGGi ecj:Y75_p1901.
eco:b1930.
PATRICi 32119195. VBIEscCol129921_2012.

Organism-specific databases

EchoBASEi EB1613.
EcoGenei EG11661. yedF.

Phylogenomic databases

eggNOGi COG0425.
HOGENOMi HOG000259289.
OMAi IISDCPQ.
OrthoDBi EOG6W9XFB.
PhylomeDBi P0AA31.

Enzyme and pathway databases

BioCyci EcoCyc:EG11661-MONOMER.
ECOL316407:JW1915-MONOMER.

Miscellaneous databases

EvolutionaryTracei P0AA31.
PROi P0AA31.

Gene expression databases

Genevestigatori P0AA31.

Family and domain databases

Gene3Di 3.30.110.40. 1 hit.
InterProi IPR001455. TusA-like.
[Graphical view ]
Pfami PF01206. TusA. 1 hit.
[Graphical view ]
SUPFAMi SSF64307. SSF64307. 1 hit.
PROSITEi PS01148. UPF0033. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region."
    Raha M., Kihara M., Kawagishi I., Macnab R.M.
    J. Gen. Microbiol. 139:1401-1407(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiYEDF_ECOLI
AccessioniPrimary (citable) accession number: P0AA31
Secondary accession number(s): P31065
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: May 14, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

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