P0AA31 (YEDF_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0033 protein YedF

Gene names

Name:	yedF
Ordered Locus Names:	b1930, JW1915

Organism

Escherichia coli (strain K12) [Reference proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	77 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the UPF0033 family.

Ontologies

Keywords
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	response to DNA damage stimulus Inferred from expression pattern PubMed 11967071. Source: EcoliWiki
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 77

77

UPF0033 protein YedF

PRO_0000159062

Secondary structure

1

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77

Helix Strand Turn

Details...

Beta strand

6 – 10

5

Beta strand

16 – 20

5

Helix

22 – 27

6

Turn

28 – 30

3

Beta strand

36 – 42

7

Beta strand

44 – 47

4

Helix

49 – 57

9

Beta strand

60 – 66

7

Beta strand

68 – 76

9

Sequences

	Sequence		Length	Mass (Da)
	P0AA31 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: 40E393E76CC54AB0	FASTA	77	8,639
	10 20 30 40 50 60 MKNIVPDYRL DMVGEPCPYP AVATLEAMPQ LKKGEILEVV SDCPQSINNI PLDARNHGYT 70 VLDIQQDGPT IRYLIQK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region." Raha M., Kihara M., Kawagishi I., Macnab R.M. J. Gen. Microbiol. 139:1401-1407(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map." Itoh T., Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Kasai H., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S. , Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Wada C., Yamamoto Y., Horiuchi T. DNA Res. 3:379-392(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[4]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[5]	"An NMR approach to structural proteomics." Yee A., Chang X., Pineda-Lucena A., Wu B., Semesi A., Le B., Ramelot T., Lee G.M., Bhattacharyya S., Gutierrez P., Denisov A., Lee C.-H., Cort J.R., Kozlov G., Liao J., Finak G., Chen L., Wishart D. , Lee W., McIntosh L.P., Gehring K., Kennedy M.A., Edwards A.M., Arrowsmith C.H. Proc. Natl. Acad. Sci. U.S.A. 99:1825-1830(2002) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY NMR.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

L13279 Genomic DNA. Translation: AAA82578.1.
U00096 Genomic DNA. Translation: AAC74997.1.
AP009048 Genomic DNA. Translation: BAA15758.1.

PIR

G64956.

RefSeq

NP_416440.1. NC_000913.2.
YP_490187.1. NC_007779.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1JE3	NMR	-	A	1-77	[»]

ProteinModelPortal

P0AA31.

SMR

P0AA31. Positions 1-77.

ModBase

Search...

Protein-protein interaction databases

IntAct

P0AA31. 4 interactions.

STRING

511145.b1930.

Proteomic databases

PaxDb

P0AA31.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

AAC74997; AAC74997; b1930.
BAA15758; BAA15758; BAA15758.

GeneID

12932065.
946909.

KEGG

ecj:Y75_p1901.
eco:b1930.

PATRIC

32119195. VBIEscCol129921_2012.

Organism-specific databases

EchoBASE

EB1613.

EcoGene

EG11661. yedF.

Phylogenomic databases

eggNOG

COG0425.

HOGENOM

HOG000259289.

OMA

NHGYEVL.

ProtClustDB

PRK11018.

Enzyme and pathway databases

BioCyc

EcoCyc:EG11661-MONOMER.
ECOL316407:JW1915-MONOMER.

Gene expression databases

Genevestigator

P0AA31.

Family and domain databases

Gene3D

3.30.110.40. 1 hit.

InterPro

IPR001455. TusA-like.
[Graphical view]

Pfam

PF01206. SirA. 1 hit.
[Graphical view]

SUPFAM

SSF64307. SirA_like. 1 hit.

PROSITE

PS01148. UPF0033. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

P0AA31.

Entry information

Entry name

YEDF_ECOLI

Accession

Primary (citable) accession number: P0AA31
Secondary accession number(s): P31065

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program