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Protein

UPF0033 protein YedF

Gene

yedF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11661-MONOMER.
ECOL316407:JW1915-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0033 protein YedF
Gene namesi
Name:yedF
Ordered Locus Names:b1930, JW1915
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11661. yedF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7777UPF0033 protein YedFPRO_0000159062Add
BLAST

Proteomic databases

PaxDbiP0AA31.

Expressioni

Gene expression databases

GenevestigatoriP0AA31.

Interactioni

Protein-protein interaction databases

IntActiP0AA31. 4 interactions.
STRINGi511145.b1930.

Structurei

Secondary structure

1
77
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 105Combined sources
Beta strandi16 – 205Combined sources
Helixi22 – 276Combined sources
Turni28 – 303Combined sources
Beta strandi36 – 427Combined sources
Beta strandi44 – 474Combined sources
Helixi49 – 579Combined sources
Beta strandi60 – 667Combined sources
Beta strandi68 – 769Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1JE3NMR-A1-77[»]
ProteinModelPortaliP0AA31.
SMRiP0AA31. Positions 1-77.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AA31.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0033 family.Curated

Phylogenomic databases

eggNOGiCOG0425.
HOGENOMiHOG000259289.
InParanoidiP0AA31.
OMAiIISDCPQ.
OrthoDBiEOG6W9XFB.
PhylomeDBiP0AA31.

Family and domain databases

Gene3Di3.30.110.40. 1 hit.
InterProiIPR001455. TusA-like.
[Graphical view]
PfamiPF01206. TusA. 1 hit.
[Graphical view]
SUPFAMiSSF64307. SSF64307. 1 hit.
PROSITEiPS01148. UPF0033. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AA31-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNIVPDYRL DMVGEPCPYP AVATLEAMPQ LKKGEILEVV SDCPQSINNI
60 70
PLDARNHGYT VLDIQQDGPT IRYLIQK
Length:77
Mass (Da):8,639
Last modified:September 13, 2005 - v1
Checksum:i40E393E76CC54AB0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. Translation: AAA82578.1.
U00096 Genomic DNA. Translation: AAC74997.1.
AP009048 Genomic DNA. Translation: BAA15758.1.
PIRiG64956.
RefSeqiNP_416440.1. NC_000913.3.
YP_490187.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC74997; AAC74997; b1930.
BAA15758; BAA15758; BAA15758.
GeneIDi12932065.
946909.
KEGGiecj:Y75_p1901.
eco:b1930.
PATRICi32119195. VBIEscCol129921_2012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. Translation: AAA82578.1.
U00096 Genomic DNA. Translation: AAC74997.1.
AP009048 Genomic DNA. Translation: BAA15758.1.
PIRiG64956.
RefSeqiNP_416440.1. NC_000913.3.
YP_490187.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1JE3NMR-A1-77[»]
ProteinModelPortaliP0AA31.
SMRiP0AA31. Positions 1-77.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP0AA31. 4 interactions.
STRINGi511145.b1930.

Proteomic databases

PaxDbiP0AA31.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74997; AAC74997; b1930.
BAA15758; BAA15758; BAA15758.
GeneIDi12932065.
946909.
KEGGiecj:Y75_p1901.
eco:b1930.
PATRICi32119195. VBIEscCol129921_2012.

Organism-specific databases

EchoBASEiEB1613.
EcoGeneiEG11661. yedF.

Phylogenomic databases

eggNOGiCOG0425.
HOGENOMiHOG000259289.
InParanoidiP0AA31.
OMAiIISDCPQ.
OrthoDBiEOG6W9XFB.
PhylomeDBiP0AA31.

Enzyme and pathway databases

BioCyciEcoCyc:EG11661-MONOMER.
ECOL316407:JW1915-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0AA31.
PROiP0AA31.

Gene expression databases

GenevestigatoriP0AA31.

Family and domain databases

Gene3Di3.30.110.40. 1 hit.
InterProiIPR001455. TusA-like.
[Graphical view]
PfamiPF01206. TusA. 1 hit.
[Graphical view]
SUPFAMiSSF64307. SSF64307. 1 hit.
PROSITEiPS01148. UPF0033. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region."
    Raha M., Kihara M., Kawagishi I., Macnab R.M.
    J. Gen. Microbiol. 139:1401-1407(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiYEDF_ECOLI
AccessioniPrimary (citable) accession number: P0AA31
Secondary accession number(s): P31065
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: January 7, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.