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P0AA31

- YEDF_ECOLI

UniProt

P0AA31 - YEDF_ECOLI

Protein

UPF0033 protein YedF

Gene

yedF

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Biological processi

    1. cellular response to DNA damage stimulus Source: EcoliWiki

    Enzyme and pathway databases

    BioCyciEcoCyc:EG11661-MONOMER.
    ECOL316407:JW1915-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0033 protein YedF
    Gene namesi
    Name:yedF
    Ordered Locus Names:b1930, JW1915
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG11661. yedF.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7777UPF0033 protein YedFPRO_0000159062Add
    BLAST

    Proteomic databases

    PaxDbiP0AA31.

    Expressioni

    Gene expression databases

    GenevestigatoriP0AA31.

    Interactioni

    Protein-protein interaction databases

    IntActiP0AA31. 4 interactions.
    STRINGi511145.b1930.

    Structurei

    Secondary structure

    1
    77
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi6 – 105
    Beta strandi16 – 205
    Helixi22 – 276
    Turni28 – 303
    Beta strandi36 – 427
    Beta strandi44 – 474
    Helixi49 – 579
    Beta strandi60 – 667
    Beta strandi68 – 769

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1JE3NMR-A1-77[»]
    ProteinModelPortaliP0AA31.
    SMRiP0AA31. Positions 1-77.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP0AA31.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the UPF0033 family.Curated

    Phylogenomic databases

    eggNOGiCOG0425.
    HOGENOMiHOG000259289.
    OMAiIISDCPQ.
    OrthoDBiEOG6W9XFB.
    PhylomeDBiP0AA31.

    Family and domain databases

    Gene3Di3.30.110.40. 1 hit.
    InterProiIPR001455. TusA-like.
    [Graphical view]
    PfamiPF01206. TusA. 1 hit.
    [Graphical view]
    SUPFAMiSSF64307. SSF64307. 1 hit.
    PROSITEiPS01148. UPF0033. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P0AA31-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKNIVPDYRL DMVGEPCPYP AVATLEAMPQ LKKGEILEVV SDCPQSINNI   50
    PLDARNHGYT VLDIQQDGPT IRYLIQK 77
    Length:77
    Mass (Da):8,639
    Last modified:September 13, 2005 - v1
    Checksum:i40E393E76CC54AB0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L13279 Genomic DNA. Translation: AAA82578.1.
    U00096 Genomic DNA. Translation: AAC74997.1.
    AP009048 Genomic DNA. Translation: BAA15758.1.
    PIRiG64956.
    RefSeqiNP_416440.1. NC_000913.3.
    YP_490187.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC74997; AAC74997; b1930.
    BAA15758; BAA15758; BAA15758.
    GeneIDi12932065.
    946909.
    KEGGiecj:Y75_p1901.
    eco:b1930.
    PATRICi32119195. VBIEscCol129921_2012.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L13279 Genomic DNA. Translation: AAA82578.1 .
    U00096 Genomic DNA. Translation: AAC74997.1 .
    AP009048 Genomic DNA. Translation: BAA15758.1 .
    PIRi G64956.
    RefSeqi NP_416440.1. NC_000913.3.
    YP_490187.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1JE3 NMR - A 1-77 [» ]
    ProteinModelPortali P0AA31.
    SMRi P0AA31. Positions 1-77.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P0AA31. 4 interactions.
    STRINGi 511145.b1930.

    Proteomic databases

    PaxDbi P0AA31.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC74997 ; AAC74997 ; b1930 .
    BAA15758 ; BAA15758 ; BAA15758 .
    GeneIDi 12932065.
    946909.
    KEGGi ecj:Y75_p1901.
    eco:b1930.
    PATRICi 32119195. VBIEscCol129921_2012.

    Organism-specific databases

    EchoBASEi EB1613.
    EcoGenei EG11661. yedF.

    Phylogenomic databases

    eggNOGi COG0425.
    HOGENOMi HOG000259289.
    OMAi IISDCPQ.
    OrthoDBi EOG6W9XFB.
    PhylomeDBi P0AA31.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG11661-MONOMER.
    ECOL316407:JW1915-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P0AA31.
    PROi P0AA31.

    Gene expression databases

    Genevestigatori P0AA31.

    Family and domain databases

    Gene3Di 3.30.110.40. 1 hit.
    InterProi IPR001455. TusA-like.
    [Graphical view ]
    Pfami PF01206. TusA. 1 hit.
    [Graphical view ]
    SUPFAMi SSF64307. SSF64307. 1 hit.
    PROSITEi PS01148. UPF0033. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region."
      Raha M., Kihara M., Kawagishi I., Macnab R.M.
      J. Gen. Microbiol. 139:1401-1407(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    5. Cited for: STRUCTURE BY NMR.

    Entry informationi

    Entry nameiYEDF_ECOLI
    AccessioniPrimary (citable) accession number: P0AA31
    Secondary accession number(s): P31065
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 13, 2005
    Last sequence update: September 13, 2005
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families
    4. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries

    External Data

    Dasty 3