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P0AA31 (YEDF_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
UPF0033 protein YedF
Gene names
Name:yedF
Ordered Locus Names:b1930, JW1915
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length77 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the UPF0033 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7777UPF0033 protein YedF
PRO_0000159062

Secondary structure

.................. 77
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P0AA31 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: 40E393E76CC54AB0

FASTA778,639
        10         20         30         40         50         60 
MKNIVPDYRL DMVGEPCPYP AVATLEAMPQ LKKGEILEVV SDCPQSINNI PLDARNHGYT 

        70 
VLDIQQDGPT IRYLIQK 

« Hide

References

« Hide 'large scale' references
[1]"Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region."
Raha M., Kihara M., Kawagishi I., Macnab R.M.
J. Gen. Microbiol. 139:1401-1407(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map."
Itoh T., Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Kasai H., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S. expand/collapse author list , Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Wada C., Yamamoto Y., Horiuchi T.
DNA Res. 3:379-392(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[4]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[5]"An NMR approach to structural proteomics."
Yee A., Chang X., Pineda-Lucena A., Wu B., Semesi A., Le B., Ramelot T., Lee G.M., Bhattacharyya S., Gutierrez P., Denisov A., Lee C.-H., Cort J.R., Kozlov G., Liao J., Finak G., Chen L., Wishart D. expand/collapse author list , Lee W., McIntosh L.P., Gehring K., Kennedy M.A., Edwards A.M., Arrowsmith C.H.
Proc. Natl. Acad. Sci. U.S.A. 99:1825-1830(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY NMR.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
L13279 Genomic DNA. Translation: AAA82578.1.
U00096 Genomic DNA. Translation: AAC74997.1.
AP009048 Genomic DNA. Translation: BAA15758.1.
PIRG64956.
RefSeqNP_416440.1. NC_000913.3.
YP_490187.1. NC_007779.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1JE3NMR-A1-77[»]
ProteinModelPortalP0AA31.
SMRP0AA31. Positions 1-77.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP0AA31. 4 interactions.
STRING511145.b1930.

Proteomic databases

PaxDbP0AA31.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC74997; AAC74997; b1930.
BAA15758; BAA15758; BAA15758.
GeneID12932065.
946909.
KEGGecj:Y75_p1901.
eco:b1930.
PATRIC32119195. VBIEscCol129921_2012.

Organism-specific databases

EchoBASEEB1613.
EcoGeneEG11661. yedF.

Phylogenomic databases

eggNOGCOG0425.
HOGENOMHOG000259289.
OMAIISDCPQ.
OrthoDBEOG6W9XFB.
PhylomeDBP0AA31.

Enzyme and pathway databases

BioCycEcoCyc:EG11661-MONOMER.
ECOL316407:JW1915-MONOMER.

Gene expression databases

GenevestigatorP0AA31.

Family and domain databases

Gene3D3.30.110.40. 1 hit.
InterProIPR001455. TusA-like.
[Graphical view]
PfamPF01206. TusA. 1 hit.
[Graphical view]
SUPFAMSSF64307. SSF64307. 1 hit.
PROSITEPS01148. UPF0033. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP0AA31.
PROP0AA31.

Entry information

Entry nameYEDF_ECOLI
AccessionPrimary (citable) accession number: P0AA31
Secondary accession number(s): P31065
Entry history
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: September 13, 2005
Last modified: May 14, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene