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Protein

Protein YrdA

Gene

yrdA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • zinc ion binding Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7696-MONOMER.
ECOL316407:JW5710-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YrdA
Gene namesi
Name:yrdA
Ordered Locus Names:b3279, JW5710
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12838. yrdA.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 184184Protein YrdAPRO_0000077470Add
BLAST

Proteomic databases

EPDiP0A9W9.
PaxDbiP0A9W9.
PRIDEiP0A9W9.

Interactioni

Protein-protein interaction databases

BioGridi4263477. 7 interactions.
DIPiDIP-48232N.
STRINGi511145.b3279.

Structurei

Secondary structure

1
184
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi26 – 338Combined sources
Beta strandi44 – 5411Combined sources
Beta strandi65 – 673Combined sources
Beta strandi81 – 833Combined sources
Beta strandi94 – 974Combined sources
Beta strandi102 – 1065Combined sources
Beta strandi120 – 1245Combined sources
Beta strandi140 – 1434Combined sources
Turni144 – 1474Combined sources
Beta strandi148 – 1525Combined sources
Helixi155 – 17723Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3TIOX-ray1.41A/B/C/D/E/F2-184[»]
3TISX-ray2.30A/B/C2-184[»]
ProteinModelPortaliP0A9W9.
SMRiP0A9W9. Positions 3-179.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108Z0R. Bacteria.
COG0663. LUCA.
HOGENOMiHOG000049430.
InParanoidiP0A9W9.
OMAiKYSANNY.
PhylomeDBiP0A9W9.

Family and domain databases

InterProiIPR001451. Hexapep.
IPR011004. Trimer_LpxA-like.
[Graphical view]
PfamiPF00132. Hexapep. 2 hits.
[Graphical view]
SUPFAMiSSF51161. SSF51161. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A9W9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDVLRPYRD LFPQIGQRVM IDDSSVVIGD VRLADDVGIW PLVVIRGDVH
60 70 80 90 100
YVQIGARTNI QDGSMLHVTH KSSYNPDGNP LTIGEDVTVG HKVMLHGCTI
110 120 130 140 150
GNRVLVGMGS ILLDGAIVED DVMIGAGSLV PQNKRLESGY LYLGSPVKQI
160 170 180
RPLSDEEKAG LRYSANNYVK WKDEYLDQGN QTQP
Length:184
Mass (Da):20,245
Last modified:July 19, 2005 - v1
Checksum:i3F0C08819AA43983
GO

Sequence cautioni

The sequence AAA58076 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58076.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76304.2.
AP009048 Genomic DNA. Translation: BAE78012.1.
PIRiB65120.
RefSeqiNP_417738.4. NC_000913.3.
WP_001286216.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76304; AAC76304; b3279.
BAE78012; BAE78012; BAE78012.
GeneIDi947775.
KEGGiecj:JW5710.
eco:b3279.
PATRICi32121992. VBIEscCol129921_3373.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA58076.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76304.2.
AP009048 Genomic DNA. Translation: BAE78012.1.
PIRiB65120.
RefSeqiNP_417738.4. NC_000913.3.
WP_001286216.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3TIOX-ray1.41A/B/C/D/E/F2-184[»]
3TISX-ray2.30A/B/C2-184[»]
ProteinModelPortaliP0A9W9.
SMRiP0A9W9. Positions 3-179.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263477. 7 interactions.
DIPiDIP-48232N.
STRINGi511145.b3279.

Proteomic databases

EPDiP0A9W9.
PaxDbiP0A9W9.
PRIDEiP0A9W9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76304; AAC76304; b3279.
BAE78012; BAE78012; BAE78012.
GeneIDi947775.
KEGGiecj:JW5710.
eco:b3279.
PATRICi32121992. VBIEscCol129921_3373.

Organism-specific databases

EchoBASEiEB2687.
EcoGeneiEG12838. yrdA.

Phylogenomic databases

eggNOGiENOG4108Z0R. Bacteria.
COG0663. LUCA.
HOGENOMiHOG000049430.
InParanoidiP0A9W9.
OMAiKYSANNY.
PhylomeDBiP0A9W9.

Enzyme and pathway databases

BioCyciEcoCyc:G7696-MONOMER.
ECOL316407:JW5710-MONOMER.

Miscellaneous databases

PROiP0A9W9.

Family and domain databases

InterProiIPR001451. Hexapep.
IPR011004. Trimer_LpxA-like.
[Graphical view]
PfamiPF00132. Hexapep. 2 hits.
[Graphical view]
SUPFAMiSSF51161. SSF51161. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYRDA_ECOLI
AccessioniPrimary (citable) accession number: P0A9W9
Secondary accession number(s): P45770, Q2M6U4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: September 7, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.