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Protein

Uncharacterized HTH-type transcriptional regulator YiaG

Gene

yiaG

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi49 – 6820H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12624-MONOMER.
ECOL316407:JW3524-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YiaG
Gene namesi
Name:yiaG
Ordered Locus Names:b3555, JW3524
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12624. yiaG.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9696Uncharacterized HTH-type transcriptional regulator YiaGPRO_0000149766Add
BLAST

Proteomic databases

PaxDbiP0A9V5.

Interactioni

Protein-protein interaction databases

BioGridi4262532. 9 interactions.
IntActiP0A9V5. 6 interactions.
STRINGi511145.b3555.

Structurei

3D structure databases

ProteinModelPortaliP0A9V5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini38 – 9154HTH cro/C1-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105MVF. Bacteria.
COG2944. LUCA.
HOGENOMiHOG000265486.
KOiK07726.
OMAiMAMPEPQ.
OrthoDBiEOG6RC3SJ.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A9V5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYKDPMHEL LSSLEQIVFK DETQKITLTH RTTSCTEIEQ LRKGTGLKID
60 70 80 90
DFARVLGVSV AMVKEWESRR VKPSSAELKL MRLIQANPAL SKQLME
Length:96
Mass (Da):11,033
Last modified:July 19, 2005 - v1
Checksum:iA0BC34F733957268
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30139 Genomic DNA. No translation available.
U00039 Genomic DNA. Translation: AAB18532.1.
U00096 Genomic DNA. Translation: AAC76579.1.
AP009048 Genomic DNA. Translation: BAE77740.1.
PIRiS47776.
RefSeqiNP_418011.1. NC_000913.3.
WP_000455798.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76579; AAC76579; b3555.
BAE77740; BAE77740; BAE77740.
GeneIDi948071.
KEGGiecj:JW3524.
eco:b3555.
PATRICi32122582. VBIEscCol129921_3668.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M30139 Genomic DNA. No translation available.
U00039 Genomic DNA. Translation: AAB18532.1.
U00096 Genomic DNA. Translation: AAC76579.1.
AP009048 Genomic DNA. Translation: BAE77740.1.
PIRiS47776.
RefSeqiNP_418011.1. NC_000913.3.
WP_000455798.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A9V5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262532. 9 interactions.
IntActiP0A9V5. 6 interactions.
STRINGi511145.b3555.

Proteomic databases

PaxDbiP0A9V5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76579; AAC76579; b3555.
BAE77740; BAE77740; BAE77740.
GeneIDi948071.
KEGGiecj:JW3524.
eco:b3555.
PATRICi32122582. VBIEscCol129921_3668.

Organism-specific databases

EchoBASEiEB2508.
EcoGeneiEG12624. yiaG.

Phylogenomic databases

eggNOGiENOG4105MVF. Bacteria.
COG2944. LUCA.
HOGENOMiHOG000265486.
KOiK07726.
OMAiMAMPEPQ.
OrthoDBiEOG6RC3SJ.

Enzyme and pathway databases

BioCyciEcoCyc:EG12624-MONOMER.
ECOL316407:JW3524-MONOMER.

Miscellaneous databases

PROiP0A9V5.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
    Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
    Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYIAG_ECOLI
AccessioniPrimary (citable) accession number: P0A9V5
Secondary accession number(s): P37668, Q2M7L6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: January 20, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.