Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable acyl-CoA dehydrogenase YdiO

Gene

ydiO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.

Cofactori

FADBy similarity

GO - Molecular functioni

GO - Biological processi

  • 1-butanol biosynthetic process Source: CACAO
  • fatty acid beta-oxidation using acyl-CoA dehydrogenase Source: GO_Central
  • lipid homeostasis Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

FAD, Flavoprotein

Enzyme and pathway databases

BioCyciEcoCyc:G6918-MONOMER.
ECOL316407:JW5275-MONOMER.
MetaCyc:G6918-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable acyl-CoA dehydrogenase YdiO (EC:1.3.-.-)
Gene namesi
Name:ydiO
Ordered Locus Names:b1695, JW5275
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13974. ydiO.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 383383Probable acyl-CoA dehydrogenase YdiOPRO_0000201206Add
BLAST

Proteomic databases

PaxDbiP0A9U8.
PRIDEiP0A9U8.

Interactioni

Protein-protein interaction databases

BioGridi4260291. 261 interactions.
STRINGi511145.b1695.

Structurei

3D structure databases

ProteinModelPortaliP0A9U8.
SMRiP0A9U8. Positions 5-378.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the acyl-CoA dehydrogenase family.Curated

Phylogenomic databases

eggNOGiENOG4105C1G. Bacteria.
COG1960. LUCA.
HOGENOMiHOG000131659.
InParanoidiP0A9U8.
OMAiFEKAFQY.
OrthoDBiEOG6J48HZ.
PhylomeDBiP0A9U8.

Family and domain databases

Gene3Di1.10.540.10. 1 hit.
InterProiIPR006089. Acyl-CoA_DH_CS.
IPR006091. Acyl-CoA_Oxase/DH_cen-dom.
IPR009075. AcylCo_DH/oxidase_C.
IPR013786. AcylCoA_DH/ox_N.
IPR009100. AcylCoA_DH/oxidase_NM_dom.
[Graphical view]
PfamiPF00441. Acyl-CoA_dh_1. 1 hit.
PF02770. Acyl-CoA_dh_M. 1 hit.
PF02771. Acyl-CoA_dh_N. 1 hit.
[Graphical view]
SUPFAMiSSF47203. SSF47203. 1 hit.
SSF56645. SSF56645. 1 hit.
PROSITEiPS00072. ACYL_COA_DH_1. 1 hit.
PS00073. ACYL_COA_DH_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A9U8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFSLTEEQE LLLASIRELI TTNFPEEYFR TCDQNGTYPR EFMRALADNG
60 70 80 90 100
ISMLGVPEEF GGIPADYVTQ MLALMEVSKC GAPAFLITNG QCIHSMRRFG
110 120 130 140 150
SAEQLRKTAE STLETGDPAY ALALTEPGAG SDNNSATTTY TRKNGKVYIN
160 170 180 190 200
GQKTFITGAK EYPYMLVLAR DPQPKDPKKA FTLWWVDSSK PGIKINPLHK
210 220 230 240 250
IGWHMLSTCE VYLDNVEVEE SDMVGEEGMG FLNVMYNFEM ERLINAARST
260 270 280 290 300
GFAECAFEDA ARYANQRIAF GKPIGHNQMI QEKLALMAIK IDNMRNMVLK
310 320 330 340 350
VAWQADQHQS LRTSAALAKL YCARTAMEVI DDAIQIMGGL GYTDEARVSR
360 370 380
FWRDVRCERI GGGTDEIMIY VAGRQILKDY QNK
Length:383
Mass (Da):43,002
Last modified:July 19, 2005 - v1
Checksum:i2391FD85D17C7003
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74765.2.
AP009048 Genomic DNA. Translation: BAA15464.2.
PIRiG64927.
RefSeqiNP_416210.4. NC_000913.3.
WP_000347850.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74765; AAC74765; b1695.
BAA15464; BAA15464; BAA15464.
GeneIDi945626.
KEGGiecj:JW5275.
eco:b1695.
PATRICi32118696. VBIEscCol129921_1766.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74765.2.
AP009048 Genomic DNA. Translation: BAA15464.2.
PIRiG64927.
RefSeqiNP_416210.4. NC_000913.3.
WP_000347850.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A9U8.
SMRiP0A9U8. Positions 5-378.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260291. 261 interactions.
STRINGi511145.b1695.

Proteomic databases

PaxDbiP0A9U8.
PRIDEiP0A9U8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74765; AAC74765; b1695.
BAA15464; BAA15464; BAA15464.
GeneIDi945626.
KEGGiecj:JW5275.
eco:b1695.
PATRICi32118696. VBIEscCol129921_1766.

Organism-specific databases

EchoBASEiEB3731.
EcoGeneiEG13974. ydiO.

Phylogenomic databases

eggNOGiENOG4105C1G. Bacteria.
COG1960. LUCA.
HOGENOMiHOG000131659.
InParanoidiP0A9U8.
OMAiFEKAFQY.
OrthoDBiEOG6J48HZ.
PhylomeDBiP0A9U8.

Enzyme and pathway databases

BioCyciEcoCyc:G6918-MONOMER.
ECOL316407:JW5275-MONOMER.
MetaCyc:G6918-MONOMER.

Miscellaneous databases

PROiP0A9U8.

Family and domain databases

Gene3Di1.10.540.10. 1 hit.
InterProiIPR006089. Acyl-CoA_DH_CS.
IPR006091. Acyl-CoA_Oxase/DH_cen-dom.
IPR009075. AcylCo_DH/oxidase_C.
IPR013786. AcylCoA_DH/ox_N.
IPR009100. AcylCoA_DH/oxidase_NM_dom.
[Graphical view]
PfamiPF00441. Acyl-CoA_dh_1. 1 hit.
PF02770. Acyl-CoA_dh_M. 1 hit.
PF02771. Acyl-CoA_dh_N. 1 hit.
[Graphical view]
SUPFAMiSSF47203. SSF47203. 1 hit.
SSF56645. SSF56645. 1 hit.
PROSITEiPS00072. ACYL_COA_DH_1. 1 hit.
PS00073. ACYL_COA_DH_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 1-117.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDIO_ECOLI
AccessioniPrimary (citable) accession number: P0A9U8
Secondary accession number(s): P76200, P76897, Q8X5X5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: January 20, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.