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Protein

Uncharacterized ABC transporter ATP-binding protein YbiT

Gene

ybiT

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi34 – 418ATP 1PROSITE-ProRule annotation
Nucleotide bindingi352 – 3598ATP 2PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

  • response to cold Source: EcoCyc
  • transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6423-MONOMER.
ECOL316407:JW0804-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ABC transporter ATP-binding protein YbiT
Gene namesi
Name:ybiT
Ordered Locus Names:b0820, JW0804
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13325. ybiT.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 530530Uncharacterized ABC transporter ATP-binding protein YbiTPRO_0000093158Add
BLAST

Proteomic databases

EPDiP0A9U3.
PaxDbiP0A9U3.
PRIDEiP0A9U3.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
sapFP0AAH82EBI-558999,EBI-558765

Protein-protein interaction databases

BioGridi4260856. 9 interactions.
DIPiDIP-11439N.
IntActiP0A9U3. 3 interactions.
MINTiMINT-1321005.
STRINGi511145.b0820.

Structurei

3D structure databases

ProteinModelPortaliP0A9U3.
SMRiP0A9U3. Positions 2-527.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 252251ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini320 – 526207ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105C5H. Bacteria.
COG0488. LUCA.
HOGENOMiHOG000271629.
InParanoidiP0A9U3.
OMAiWSENAKI.
PhylomeDBiP0A9U3.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR003593. AAA+_ATPase.
IPR032781. ABC_tran_Xtn.
IPR003439. ABC_transporter-like.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
PF12848. ABC_tran_Xtn. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A9U3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLVSSNVTMQ FGSKPLFENI SVKFGGGNRY GLIGANGSGK STFMKILGGD
60 70 80 90 100
LEPTLGNVSL DPNERIGKLR QDQFAFEEFT VLDTVIMGHK ELWEVKQERD
110 120 130 140 150
RIYALPEMSE EDGYKVADLE VKYGEMDGYS AEARAGELLL GVGIPVEQHY
160 170 180 190 200
GPMSEVAPGW KLRVLLAQAL FADPDILLLD EPTNNLDIDT IRWLEQVLNE
210 220 230 240 250
RDSTMIIISH DRHFLNMVCT HMADLDYGEL RVYPGNYDEY MTAATQARER
260 270 280 290 300
LLADNAKKKA QIAELQSFVS RFSANASKSR QATSRARQID KIKLEEVKAS
310 320 330 340 350
SRQNPFIRFE QDKKLFRNAL EVEGLTKGFD NGPLFKNLNL LLEVGEKLAV
360 370 380 390 400
LGTNGVGKST LLKTLVGDLQ PDSGTVKWSE NARIGYYAQD HEYEFENDLT
410 420 430 440 450
VFEWMSQWKQ EGDDEQAVRS ILGRLLFSQD DIKKPAKVLS GGEKGRMLFG
460 470 480 490 500
KLMMQKPNIL IMDEPTNHLD MESIESLNMA LELYQGTLIF VSHDREFVSS
510 520 530
LATRILEITP ERVIDFSGNY EDYLRSKGIE
Length:530
Mass (Da):59,858
Last modified:July 19, 2005 - v1
Checksum:iEE75D66B5A58729A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73907.1.
AP009048 Genomic DNA. Translation: BAA35501.1.
PIRiD64819.
RefSeqiNP_415341.1. NC_000913.3.
WP_000961458.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73907; AAC73907; b0820.
BAA35501; BAA35501; BAA35501.
GeneIDi945440.
KEGGiecj:JW0804.
eco:b0820.
PATRICi32116843. VBIEscCol129921_0847.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73907.1.
AP009048 Genomic DNA. Translation: BAA35501.1.
PIRiD64819.
RefSeqiNP_415341.1. NC_000913.3.
WP_000961458.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A9U3.
SMRiP0A9U3. Positions 2-527.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260856. 9 interactions.
DIPiDIP-11439N.
IntActiP0A9U3. 3 interactions.
MINTiMINT-1321005.
STRINGi511145.b0820.

Proteomic databases

EPDiP0A9U3.
PaxDbiP0A9U3.
PRIDEiP0A9U3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73907; AAC73907; b0820.
BAA35501; BAA35501; BAA35501.
GeneIDi945440.
KEGGiecj:JW0804.
eco:b0820.
PATRICi32116843. VBIEscCol129921_0847.

Organism-specific databases

EchoBASEiEB3109.
EcoGeneiEG13325. ybiT.

Phylogenomic databases

eggNOGiENOG4105C5H. Bacteria.
COG0488. LUCA.
HOGENOMiHOG000271629.
InParanoidiP0A9U3.
OMAiWSENAKI.
PhylomeDBiP0A9U3.

Enzyme and pathway databases

BioCyciEcoCyc:G6423-MONOMER.
ECOL316407:JW0804-MONOMER.

Miscellaneous databases

PROiP0A9U3.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR003593. AAA+_ATPase.
IPR032781. ABC_tran_Xtn.
IPR003439. ABC_transporter-like.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
PF12848. ABC_tran_Xtn. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBIT_ECOLI
AccessioniPrimary (citable) accession number: P0A9U3
Secondary accession number(s): P75790
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: September 7, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.