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Protein

Uncharacterized ABC transporter ATP-binding protein YbhF

Gene

ybhF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi40 – 478ATP 1PROSITE-ProRule annotation
Nucleotide bindingi362 – 3698ATP 2PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:YBHF-MONOMER.
ECOL316407:JW5104-MONOMER.
RETL1328306-WGS:GSTH-3307-MONOMER.

Protein family/group databases

TCDBi3.A.1.105.15. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ABC transporter ATP-binding protein YbhF
Gene namesi
Name:ybhF
Ordered Locus Names:b0794, JW5104
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13314. ybhF.

Subcellular locationi

GO - Cellular componenti

  • plasma membrane Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 578578Uncharacterized ABC transporter ATP-binding protein YbhFPRO_0000093156Add
BLAST

Proteomic databases

PaxDbiP0A9U1.
PRIDEiP0A9U1.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
aceEP0AFG82EBI-547696,EBI-542683
fixAP605663EBI-547696,EBI-1113126

Protein-protein interaction databases

BioGridi4261836. 11 interactions.
DIPiDIP-48149N.
IntActiP0A9U1. 7 interactions.
MINTiMINT-1249856.
STRINGi511145.b0794.

Structurei

3D structure databases

ProteinModelPortaliP0A9U1.
SMRiP0A9U1. Positions 5-547.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 237232ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini330 – 559230ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105CJ1. Bacteria.
COG1131. LUCA.
HOGENOMiHOG000014887.
InParanoidiP0A9U1.
KOiK01990.
OMAiGLVYHGK.
PhylomeDBiP0A9U1.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A9U1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDAVITLNG LEKRFPGMDK PAVAPLDCTI HAGYVTGLVG PDGAGKTTLM
60 70 80 90 100
RMLAGLLKPD SGSATVIGFD PIKNDGALHA VLGYMPQKFG LYEDLTVMEN
110 120 130 140 150
LNLYADLRSV TGEARKQTFA RLLEFTSLGP FTGRLAGKLS GGMKQKLGLA
160 170 180 190 200
CTLVGEPKVL LLDEPGVGVD PISRRELWQM VHELAGEGML ILWSTSYLDE
210 220 230 240 250
AEQCRDVLLM NEGELLYQGE PKALTQTMAG RSFLMTSPHE GNRKLLQRAL
260 270 280 290 300
KLPQVSDGMI QGKSVRLILK KEATPDDIRH ADGMPEININ ETTPRFEDAF
310 320 330 340 350
IDLLGGAGTS ESPLGAILHT VEGTPGETVI EAKELTKKFG DFAATDHVNF
360 370 380 390 400
AVKRGEIFGL LGPNGAGKST TFKMMCGLLV PTSGQALVLG MDLKESSGKA
410 420 430 440 450
RQHLGYMAQK FSLYGNLTVE QNLRFFSGVY GLRGRAQNEK ISRMSEAFGL
460 470 480 490 500
KSIASHATDE LPLGFKQRLA LACSLMHEPD ILFLDEPTSG VDPLTRREFW
510 520 530 540 550
LHINSMVEKG VTVMVTTHFM DEAEYCDRIG LVYRGKLIAS GTPDDLKAQS
560 570
ANDEQPDPTM EQAFIQLIHD WDKEHSNE
Length:578
Mass (Da):63,132
Last modified:July 19, 2005 - v1
Checksum:iDB3B3FA213490F3C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73881.2.
AP009048 Genomic DNA. Translation: BAA35454.2.
PIRiB64816.
RefSeqiNP_415315.4. NC_000913.3.
WP_000996107.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73881; AAC73881; b0794.
BAA35454; BAA35454; BAA35454.
GeneIDi945413.
KEGGiecj:JW5104.
eco:b0794.
PATRICi32116789. VBIEscCol129921_0820.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73881.2.
AP009048 Genomic DNA. Translation: BAA35454.2.
PIRiB64816.
RefSeqiNP_415315.4. NC_000913.3.
WP_000996107.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A9U1.
SMRiP0A9U1. Positions 5-547.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261836. 11 interactions.
DIPiDIP-48149N.
IntActiP0A9U1. 7 interactions.
MINTiMINT-1249856.
STRINGi511145.b0794.

Protein family/group databases

TCDBi3.A.1.105.15. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP0A9U1.
PRIDEiP0A9U1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73881; AAC73881; b0794.
BAA35454; BAA35454; BAA35454.
GeneIDi945413.
KEGGiecj:JW5104.
eco:b0794.
PATRICi32116789. VBIEscCol129921_0820.

Organism-specific databases

EchoBASEiEB3098.
EcoGeneiEG13314. ybhF.

Phylogenomic databases

eggNOGiENOG4105CJ1. Bacteria.
COG1131. LUCA.
HOGENOMiHOG000014887.
InParanoidiP0A9U1.
KOiK01990.
OMAiGLVYHGK.
PhylomeDBiP0A9U1.

Enzyme and pathway databases

BioCyciEcoCyc:YBHF-MONOMER.
ECOL316407:JW5104-MONOMER.
RETL1328306-WGS:GSTH-3307-MONOMER.

Miscellaneous databases

PROiP0A9U1.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBHF_ECOLI
AccessioniPrimary (citable) accession number: P0A9U1
Secondary accession number(s): P75776, Q9R7S3, Q9R7S4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.