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Protein

Uncharacterized HTH-type transcriptional regulator YbaQ

Gene

ybaQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi27 – 4620H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6259-MONOMER.
ECOL316407:JW0472-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbaQ
Gene namesi
Name:ybaQ
Ordered Locus Names:b0483, JW0472
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13245. ybaQ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 113113Uncharacterized HTH-type transcriptional regulator YbaQPRO_0000149753Add
BLAST

Proteomic databases

PaxDbiP0A9T6.
PRIDEiP0A9T6.

Interactioni

Protein-protein interaction databases

BioGridi4261982. 17 interactions.
IntActiP0A9T6. 4 interactions.
STRINGi511145.b0483.

Structurei

Secondary structure

1
113
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi11 – 188Combined sources
Turni19 – 246Combined sources
Helixi27 – 348Combined sources
Helixi38 – 458Combined sources
Helixi53 – 6311Combined sources
Helixi67 – 8317Combined sources
Helixi86 – 949Combined sources
Helixi98 – 10710Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2EBYX-ray2.25A/B1-113[»]
ProteinModelPortaliP0A9T6.
SMRiP0A9T6. Positions 7-108.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A9T6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini16 – 7055HTH cro/C1-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the VapA/VapI family.Curated
Contains 1 HTH cro/C1-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG41081XE. Bacteria.
COG3093. LUCA.
HOGENOMiHOG000265973.
InParanoidiP0A9T6.
OMAiVNELCND.
PhylomeDBiP0A9T6.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR013430. Toxin_antidote_HigA.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
TIGRFAMsiTIGR02607. antidote_HigA. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A9T6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQATRKPTT PGDILLYEYL EPLDLKINEL AELLHVHRNS VSALINNNRK
60 70 80 90 100
LTTEMAFRLA KVFDTTVDFW LNLQAAVDLW EVENNMRTQE ELGRIETVAE
110
YLARREERAK KVA
Length:113
Mass (Da):13,171
Last modified:July 19, 2005 - v1
Checksum:i8F9881044E6E21F9
GO

Sequence cautioni

The sequence AAB40237 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58330 Genomic DNA. Translation: AAB02269.1.
U82664 Genomic DNA. Translation: AAB40237.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73585.2.
AP009048 Genomic DNA. Translation: BAE76262.1.
PIRiB64779.
RefSeqiNP_415016.4. NC_000913.3.
WP_000806442.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73585; AAC73585; b0483.
BAE76262; BAE76262; BAE76262.
GeneIDi948800.
KEGGiecj:JW0472.
eco:b0483.
PATRICi32116123. VBIEscCol129921_0503.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58330 Genomic DNA. Translation: AAB02269.1.
U82664 Genomic DNA. Translation: AAB40237.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73585.2.
AP009048 Genomic DNA. Translation: BAE76262.1.
PIRiB64779.
RefSeqiNP_415016.4. NC_000913.3.
WP_000806442.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2EBYX-ray2.25A/B1-113[»]
ProteinModelPortaliP0A9T6.
SMRiP0A9T6. Positions 7-108.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261982. 17 interactions.
IntActiP0A9T6. 4 interactions.
STRINGi511145.b0483.

Proteomic databases

PaxDbiP0A9T6.
PRIDEiP0A9T6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73585; AAC73585; b0483.
BAE76262; BAE76262; BAE76262.
GeneIDi948800.
KEGGiecj:JW0472.
eco:b0483.
PATRICi32116123. VBIEscCol129921_0503.

Organism-specific databases

EchoBASEiEB3034.
EcoGeneiEG13245. ybaQ.

Phylogenomic databases

eggNOGiENOG41081XE. Bacteria.
COG3093. LUCA.
HOGENOMiHOG000265973.
InParanoidiP0A9T6.
OMAiVNELCND.
PhylomeDBiP0A9T6.

Enzyme and pathway databases

BioCyciEcoCyc:G6259-MONOMER.
ECOL316407:JW0472-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0A9T6.
PROiP0A9T6.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR013430. Toxin_antidote_HigA.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
TIGRFAMsiTIGR02607. antidote_HigA. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBAQ_ECOLI
AccessioniPrimary (citable) accession number: P0A9T6
Secondary accession number(s): P77303, Q2MBU4, Q47008
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.