Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YbaQ

Gene

ybaQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi27 – 46H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6259-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbaQ
Gene namesi
Name:ybaQ
Ordered Locus Names:b0483, JW0472
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13245 ybaQ

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001497531 – 113Uncharacterized HTH-type transcriptional regulator YbaQAdd BLAST113

Proteomic databases

PaxDbiP0A9T6
PRIDEiP0A9T6

Interactioni

Protein-protein interaction databases

BioGridi426198217 interactors.
IntActiP0A9T6 4 interactors.
STRINGi316385.ECDH10B_0440

Structurei

Secondary structure

1113
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi11 – 18Combined sources8
Turni19 – 24Combined sources6
Helixi27 – 34Combined sources8
Helixi38 – 45Combined sources8
Helixi53 – 63Combined sources11
Helixi67 – 83Combined sources17
Helixi86 – 94Combined sources9
Helixi98 – 107Combined sources10

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2EBYX-ray2.25A/B1-113[»]
ProteinModelPortaliP0A9T6
SMRiP0A9T6
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A9T6

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini16 – 70HTH cro/C1-typePROSITE-ProRule annotationAdd BLAST55

Sequence similaritiesi

Belongs to the VapA/VapI family.Curated

Phylogenomic databases

eggNOGiENOG41081XE Bacteria
COG3093 LUCA
HOGENOMiHOG000265973
InParanoidiP0A9T6
KOiK21498
OMAiGNSAKFW
PhylomeDBiP0A9T6

Family and domain databases

CDDicd00093 HTH_XRE, 1 hit
InterProiView protein in InterPro
IPR001387 Cro/C1-type_HTH
IPR010982 Lambda_DNA-bd_dom_sf
IPR013430 Toxin_antidote_HigA
PANTHERiPTHR36924 PTHR36924, 1 hit
PfamiView protein in Pfam
PF01381 HTH_3, 1 hit
SMARTiView protein in SMART
SM00530 HTH_XRE, 1 hit
SUPFAMiSSF47413 SSF47413, 1 hit
TIGRFAMsiTIGR02607 antidote_HigA, 1 hit
PROSITEiView protein in PROSITE
PS50943 HTH_CROC1, 1 hit

Sequencei

Sequence statusi: Complete.

P0A9T6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQATRKPTT PGDILLYEYL EPLDLKINEL AELLHVHRNS VSALINNNRK
60 70 80 90 100
LTTEMAFRLA KVFDTTVDFW LNLQAAVDLW EVENNMRTQE ELGRIETVAE
110
YLARREERAK KVA
Length:113
Mass (Da):13,171
Last modified:July 19, 2005 - v1
Checksum:i8F9881044E6E21F9
GO

Sequence cautioni

The sequence AAB40237 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58330 Genomic DNA Translation: AAB02269.1
U82664 Genomic DNA Translation: AAB40237.1 Different initiation.
U00096 Genomic DNA Translation: AAC73585.2
AP009048 Genomic DNA Translation: BAE76262.1
PIRiB64779
RefSeqiNP_415016.4, NC_000913.3
WP_000806442.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73585; AAC73585; b0483
BAE76262; BAE76262; BAE76262
GeneIDi948800
KEGGiecj:JW0472
eco:b0483
PATRICifig|511145.12.peg.503

Similar proteinsi

Entry informationi

Entry nameiYBAQ_ECOLI
AccessioniPrimary (citable) accession number: P0A9T6
Secondary accession number(s): P77303, Q2MBU4, Q47008
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: March 28, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome