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Protein

Uncharacterized HTH-type transcriptional regulator YbaQ

Gene

ybaQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi27 – 4620H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6259-MONOMER.
ECOL316407:JW0472-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbaQ
Gene namesi
Name:ybaQ
Ordered Locus Names:b0483, JW0472
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13245. ybaQ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 113113Uncharacterized HTH-type transcriptional regulator YbaQPRO_0000149753Add
BLAST

Proteomic databases

PaxDbiP0A9T6.
PRIDEiP0A9T6.

Interactioni

Protein-protein interaction databases

BioGridi4261982. 17 interactions.
IntActiP0A9T6. 4 interactions.
STRINGi511145.b0483.

Structurei

Secondary structure

1
113
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi11 – 188Combined sources
Turni19 – 246Combined sources
Helixi27 – 348Combined sources
Helixi38 – 458Combined sources
Helixi53 – 6311Combined sources
Helixi67 – 8317Combined sources
Helixi86 – 949Combined sources
Helixi98 – 10710Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2EBYX-ray2.25A/B1-113[»]
ProteinModelPortaliP0A9T6.
SMRiP0A9T6. Positions 7-108.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A9T6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini16 – 7055HTH cro/C1-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the VapA/VapI family.Curated
Contains 1 HTH cro/C1-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG41081XE. Bacteria.
COG3093. LUCA.
HOGENOMiHOG000265973.
InParanoidiP0A9T6.
OMAiVNELCND.
OrthoDBiEOG67DPQ2.
PhylomeDBiP0A9T6.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR013430. Toxin_antidote_HigA.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
TIGRFAMsiTIGR02607. antidote_HigA. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A9T6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQATRKPTT PGDILLYEYL EPLDLKINEL AELLHVHRNS VSALINNNRK
60 70 80 90 100
LTTEMAFRLA KVFDTTVDFW LNLQAAVDLW EVENNMRTQE ELGRIETVAE
110
YLARREERAK KVA
Length:113
Mass (Da):13,171
Last modified:July 19, 2005 - v1
Checksum:i8F9881044E6E21F9
GO

Sequence cautioni

The sequence AAB40237.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58330 Genomic DNA. Translation: AAB02269.1.
U82664 Genomic DNA. Translation: AAB40237.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73585.2.
AP009048 Genomic DNA. Translation: BAE76262.1.
PIRiB64779.
RefSeqiNP_415016.4. NC_000913.3.
WP_000806442.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73585; AAC73585; b0483.
BAE76262; BAE76262; BAE76262.
GeneIDi948800.
KEGGiecj:JW0472.
eco:b0483.
PATRICi32116123. VBIEscCol129921_0503.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58330 Genomic DNA. Translation: AAB02269.1.
U82664 Genomic DNA. Translation: AAB40237.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73585.2.
AP009048 Genomic DNA. Translation: BAE76262.1.
PIRiB64779.
RefSeqiNP_415016.4. NC_000913.3.
WP_000806442.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2EBYX-ray2.25A/B1-113[»]
ProteinModelPortaliP0A9T6.
SMRiP0A9T6. Positions 7-108.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261982. 17 interactions.
IntActiP0A9T6. 4 interactions.
STRINGi511145.b0483.

Proteomic databases

PaxDbiP0A9T6.
PRIDEiP0A9T6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73585; AAC73585; b0483.
BAE76262; BAE76262; BAE76262.
GeneIDi948800.
KEGGiecj:JW0472.
eco:b0483.
PATRICi32116123. VBIEscCol129921_0503.

Organism-specific databases

EchoBASEiEB3034.
EcoGeneiEG13245. ybaQ.

Phylogenomic databases

eggNOGiENOG41081XE. Bacteria.
COG3093. LUCA.
HOGENOMiHOG000265973.
InParanoidiP0A9T6.
OMAiVNELCND.
OrthoDBiEOG67DPQ2.
PhylomeDBiP0A9T6.

Enzyme and pathway databases

BioCyciEcoCyc:G6259-MONOMER.
ECOL316407:JW0472-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0A9T6.
PROiP0A9T6.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR013430. Toxin_antidote_HigA.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
TIGRFAMsiTIGR02607. antidote_HigA. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Das S., Chuang E., Vulpe C., Goldman J., Gitschier J.
    Submitted (JUN-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBAQ_ECOLI
AccessioniPrimary (citable) accession number: P0A9T6
Secondary accession number(s): P77303, Q2MBU4, Q47008
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: January 20, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.