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Protein

Lysis protein S homolog from lambdoid prophage DLP12

Gene

essD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • cytolysis by virus of host cell Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Cytolysis, Host cell lysis by virus, Virus exit from host cell

Enzyme and pathway databases

BioCyciEcoCyc:G6309-MONOMER.
ECOL316407:JW0543-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Lysis protein S homolog from lambdoid prophage DLP12
Gene namesi
Name:essD
Synonyms:ybcR
Ordered Locus Names:b0554, JW0543
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13634. essD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7171Lysis protein S homolog from lambdoid prophage DLP12PRO_0000077655Add
BLAST

Proteomic databases

PaxDbiP0A9R2.
PRIDEiP0A9R2.

Interactioni

Protein-protein interaction databases

BioGridi4259884. 11 interactions.
STRINGi511145.b0554.

Structurei

3D structure databases

ProteinModelPortaliP0A9R2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the lambda phage S protein family.Curated

Phylogenomic databases

eggNOGiENOG4105QFS. Bacteria.
ENOG4111XDG. LUCA.
HOGENOMiHOG000120019.
OMAiVMKSMDK.
OrthoDBiEOG6K6VDJ.

Family and domain databases

InterProiIPR007054. Lysis_S.
[Graphical view]
PfamiPF04971. Phage_holin_2_1. 1 hit.
[Graphical view]
PIRSFiPIRSF030786. Lysis_S. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A9R2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSMDKLTTG VAYGTSAGSA GYWFLQLLDK VTPSQWAAIG VLGSLVFGLL
60 70
TYLTNLYFKI KEDKRKAARG E
Length:71
Mass (Da):7,778
Last modified:July 19, 2005 - v1
Checksum:i9C013E2FE4361843
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40750.1.
U00096 Genomic DNA. Translation: AAC73655.1.
AP009048 Genomic DNA. Translation: BAE76329.1.
PIRiH64787.
RefSeqiNP_415086.1. NC_000913.3.
WP_000839596.1. NZ_CP014272.1.

Genome annotation databases

EnsemblBacteriaiAAC73655; AAC73655; b0554.
BAE76329; BAE76329; BAE76329.
GeneIDi947545.
KEGGiecj:JW0543.
eco:b0554.
PATRICi32116274. VBIEscCol129921_0577.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40750.1.
U00096 Genomic DNA. Translation: AAC73655.1.
AP009048 Genomic DNA. Translation: BAE76329.1.
PIRiH64787.
RefSeqiNP_415086.1. NC_000913.3.
WP_000839596.1. NZ_CP014272.1.

3D structure databases

ProteinModelPortaliP0A9R2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259884. 11 interactions.
STRINGi511145.b0554.

Proteomic databases

PaxDbiP0A9R2.
PRIDEiP0A9R2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73655; AAC73655; b0554.
BAE76329; BAE76329; BAE76329.
GeneIDi947545.
KEGGiecj:JW0543.
eco:b0554.
PATRICi32116274. VBIEscCol129921_0577.

Organism-specific databases

EchoBASEiEB3398.
EcoGeneiEG13634. essD.

Phylogenomic databases

eggNOGiENOG4105QFS. Bacteria.
ENOG4111XDG. LUCA.
HOGENOMiHOG000120019.
OMAiVMKSMDK.
OrthoDBiEOG6K6VDJ.

Enzyme and pathway databases

BioCyciEcoCyc:G6309-MONOMER.
ECOL316407:JW0543-MONOMER.

Miscellaneous databases

PROiP0A9R2.

Family and domain databases

InterProiIPR007054. Lysis_S.
[Graphical view]
PfamiPF04971. Phage_holin_2_1. 1 hit.
[Graphical view]
PIRSFiPIRSF030786. Lysis_S. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiESSD_ECOLI
AccessioniPrimary (citable) accession number: P0A9R2
Secondary accession number(s): P77242, Q2MBM7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: May 11, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.