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Protein

Protein NapD

Gene

napD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.

GO - Molecular functioni

  • signal sequence binding Source: EcoCyc

GO - Biological processi

  • negative regulation of protein transport Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:NAPD-MONOMER.
ECOL316407:JW2195-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NapD
Gene namesi
Name:napD
Synonyms:yojF
Ordered Locus Names:b2207, JW2195
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12143. napD.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000967131 – 87Protein NapDAdd BLAST87

Proteomic databases

PaxDbiP0A9I5.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
napAP339378EBI-554985,EBI-554952
ptaP0A9M82EBI-554985,EBI-555015
yajQP0A8E72EBI-554985,EBI-370752

Protein-protein interaction databases

BioGridi4262220. 160 interactors.
DIPiDIP-46322N.
IntActiP0A9I5. 21 interactors.
MINTiMINT-1226955.
STRINGi511145.b2207.

Structurei

Secondary structure

187
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 14Combined sources9
Helixi19 – 26Combined sources8
Beta strandi29 – 31Combined sources3
Beta strandi32 – 38Combined sources7
Turni39 – 42Combined sources4
Beta strandi43 – 52Combined sources10
Helixi53 – 63Combined sources11
Beta strandi69 – 76Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JSXNMR-A1-87[»]
2PQ4NMR-A1-87[»]
ProteinModelPortaliP0A9I5.
SMRiP0A9I5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A9I5.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG41061Q0. Bacteria.
COG3062. LUCA.
HOGENOMiHOG000275488.
InParanoidiP0A9I5.
KOiK02570.
OMAiMNNEWHV.
PhylomeDBiP0A9I5.

Family and domain databases

InterProiIPR005623. Chaperone_NapD_NO3_reduct.
[Graphical view]
PfamiPF03927. NapD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A9I5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHTNWQVCSL VVQAKSERIS DISTQLNAFP GCEVAVSDAP SGQLIVVVEA
60 70 80
EDSETLIQTI ESVRNVEGVL AVSLVYHQQE EQGEETP
Length:87
Mass (Da):9,469
Last modified:July 19, 2005 - v1
Checksum:iEE59DF4EF17F650D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00008 Genomic DNA. Translation: AAA16400.1.
U00096 Genomic DNA. Translation: AAC75267.1.
AP009048 Genomic DNA. Translation: BAA15990.1.
PIRiE64990.
RefSeqiNP_416711.1. NC_000913.3.
WP_000557378.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75267; AAC75267; b2207.
BAA15990; BAA15990; BAA15990.
GeneIDi945187.
KEGGiecj:JW2195.
eco:b2207.
PATRICi32119773. VBIEscCol129921_2296.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00008 Genomic DNA. Translation: AAA16400.1.
U00096 Genomic DNA. Translation: AAC75267.1.
AP009048 Genomic DNA. Translation: BAA15990.1.
PIRiE64990.
RefSeqiNP_416711.1. NC_000913.3.
WP_000557378.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JSXNMR-A1-87[»]
2PQ4NMR-A1-87[»]
ProteinModelPortaliP0A9I5.
SMRiP0A9I5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262220. 160 interactors.
DIPiDIP-46322N.
IntActiP0A9I5. 21 interactors.
MINTiMINT-1226955.
STRINGi511145.b2207.

Proteomic databases

PaxDbiP0A9I5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75267; AAC75267; b2207.
BAA15990; BAA15990; BAA15990.
GeneIDi945187.
KEGGiecj:JW2195.
eco:b2207.
PATRICi32119773. VBIEscCol129921_2296.

Organism-specific databases

EchoBASEiEB2064.
EcoGeneiEG12143. napD.

Phylogenomic databases

eggNOGiENOG41061Q0. Bacteria.
COG3062. LUCA.
HOGENOMiHOG000275488.
InParanoidiP0A9I5.
KOiK02570.
OMAiMNNEWHV.
PhylomeDBiP0A9I5.

Enzyme and pathway databases

BioCyciEcoCyc:NAPD-MONOMER.
ECOL316407:JW2195-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0A9I5.
PROiP0A9I5.

Family and domain databases

InterProiIPR005623. Chaperone_NapD_NO3_reduct.
[Graphical view]
PfamiPF03927. NapD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiNAPD_ECOLI
AccessioniPrimary (citable) accession number: P0A9I5
Secondary accession number(s): P33938
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: November 2, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.