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Protein

Cold shock-like protein CspH

Gene

cspH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6510-MONOMER.
ECOL316407:JW5134-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Cold shock-like protein CspH
Short name:
CSP-H
Gene namesi
Name:cspH
Synonyms:cspK
Ordered Locus Names:b0989, JW5134
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14281. cspH.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7070Cold shock-like protein CspHPRO_0000100266Add
BLAST

Proteomic databases

PaxDbiP0A982.

Interactioni

Protein-protein interaction databases

BioGridi4260035. 14 interactions.
STRINGi511145.b0989.

Structurei

3D structure databases

ProteinModelPortaliP0A982.
SMRiP0A982. Positions 4-67.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 6761CSDAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.Curated

Phylogenomic databases

eggNOGiENOG41060EU. Bacteria.
ENOG4111W5C. LUCA.
HOGENOMiHOG000070674.
InParanoidiP0A982.
KOiK03704.
OMAiIVKSFDI.
OrthoDBiEOG618R0J.
PhylomeDBiP0A982.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR012156. Cold_shock_CspA.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PIRSFiPIRSF002599. Cold_shock_A. 1 hit.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A982-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRKMTGIVK TFDRKSGKGF IIPSDGRKEV QVHISAFTPR DAEVLIPGLR
60 70
VEFCRVNGLR GPTAANVYLS
Length:70
Mass (Da):7,720
Last modified:July 19, 2005 - v1
Checksum:i8825CE2FCB1459CE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF003591 Genomic DNA. Translation: AAB61742.1.
U00096 Genomic DNA. Translation: AAC74074.1.
AP009048 Genomic DNA. Translation: BAA35755.2.
PIRiC64840.
RefSeqiNP_415509.1. NC_000913.3.
WP_000087763.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74074; AAC74074; b0989.
BAA35755; BAA35755; BAA35755.
GeneIDi945590.
KEGGiecj:JW5134.
eco:b0989.
PATRICi32117203. VBIEscCol129921_1025.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF003591 Genomic DNA. Translation: AAB61742.1.
U00096 Genomic DNA. Translation: AAC74074.1.
AP009048 Genomic DNA. Translation: BAA35755.2.
PIRiC64840.
RefSeqiNP_415509.1. NC_000913.3.
WP_000087763.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A982.
SMRiP0A982. Positions 4-67.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260035. 14 interactions.
STRINGi511145.b0989.

Proteomic databases

PaxDbiP0A982.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74074; AAC74074; b0989.
BAA35755; BAA35755; BAA35755.
GeneIDi945590.
KEGGiecj:JW5134.
eco:b0989.
PATRICi32117203. VBIEscCol129921_1025.

Organism-specific databases

EchoBASEiEB4029.
EcoGeneiEG14281. cspH.

Phylogenomic databases

eggNOGiENOG41060EU. Bacteria.
ENOG4111W5C. LUCA.
HOGENOMiHOG000070674.
InParanoidiP0A982.
KOiK03704.
OMAiIVKSFDI.
OrthoDBiEOG618R0J.
PhylomeDBiP0A982.

Enzyme and pathway databases

BioCyciEcoCyc:G6510-MONOMER.
ECOL316407:JW5134-MONOMER.

Miscellaneous databases

PROiP0A982.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR012156. Cold_shock_CspA.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PIRSFiPIRSF002599. Cold_shock_A. 1 hit.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Detection and speciation of bacteria through PCR using universal major cold-shock protein primer oligomers."
    Francis K.P., Stewart G.S.A.B.
    J. Ind. Microbiol. Biotechnol. 19:286-293(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiCSPH_ECOLI
AccessioniPrimary (citable) accession number: P0A982
Secondary accession number(s): P56253, Q9R3K1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2005
Last sequence update: July 19, 2005
Last modified: January 20, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.