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Protein

Protein YceI

Gene

yceI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11820-MONOMER.
ECOL316407:JW1043-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YceI
Gene namesi
Name:yceI
Ordered Locus Names:b1056, JW1043
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11820. yceI.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 221 PublicationAdd BLAST22
ChainiPRO_000003627623 – 191Protein YceIAdd BLAST169

Proteomic databases

EPDiP0A8X2.
PaxDbiP0A8X2.
PRIDEiP0A8X2.

2D gel databases

SWISS-2DPAGEP0A8X2.

Interactioni

Protein-protein interaction databases

BioGridi4262844. 10 interactors.
IntActiP0A8X2. 4 interactors.
STRINGi511145.b1056.

Structurei

Secondary structure

1191
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi24 – 27Combined sources4
Turni29 – 32Combined sources4
Beta strandi34 – 42Combined sources9
Turni43 – 45Combined sources3
Beta strandi46 – 52Combined sources7
Beta strandi55 – 60Combined sources6
Helixi66 – 68Combined sources3
Beta strandi70 – 76Combined sources7
Helixi77 – 79Combined sources3
Helixi85 – 92Combined sources8
Turni94 – 97Combined sources4
Turni99 – 101Combined sources3
Beta strandi104 – 115Combined sources12
Beta strandi118 – 127Combined sources10
Beta strandi130 – 145Combined sources16
Beta strandi151 – 162Combined sources12
Helixi164 – 166Combined sources3
Helixi174 – 176Combined sources3
Beta strandi177 – 189Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y0GX-ray2.20A/B/C/D1-191[»]
ProteinModelPortaliP0A8X2.
SMRiP0A8X2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A8X2.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0312 family. Type 1 subfamily.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108YYC. Bacteria.
COG2353. LUCA.
HOGENOMiHOG000262659.
InParanoidiP0A8X2.
OMAiGNYRAGF.
PhylomeDBiP0A8X2.

Family and domain databases

Gene3Di2.40.128.110. 1 hit.
HAMAPiMF_00780. UPF0312. 1 hit.
InterProiIPR007372. Lipid/polyisoprenoid-bd_YceI.
IPR023480. UPF0312/YceI.
[Graphical view]
PfamiPF04264. YceI. 1 hit.
[Graphical view]
SMARTiSM00867. YceI. 1 hit.
[Graphical view]
SUPFAMiSSF101874. SSF101874. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0A8X2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSLLGLTF ASLMFSAGSA VAADYKIDKE GQHAFVNFRI QHLGYSWLYG
60 70 80 90 100
TFKDFDGTFT FDEKNPAADK VNVTINTTSV DTNHAERDKH LRSADFLNTA
110 120 130 140 150
KYPQATFTST SVKKDGDELD ITGDLTLNGV TKPVTLEAKL IGQGDDPWGG
160 170 180 190
KRAGFEAEGK IKLKDFNIKT DLGPASQEVD LIISVEGVQQ K
Length:191
Mass (Da):20,912
Last modified:June 7, 2005 - v1
Checksum:i56C795ACA27DF3CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61000 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74140.1.
AP009048 Genomic DNA. Translation: BAA35854.1.
PIRiE64848.
RefSeqiNP_415574.1. NC_000913.3.
WP_000749261.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74140; AAC74140; b1056.
BAA35854; BAA35854; BAA35854.
GeneIDi946145.
KEGGiecj:JW1043.
eco:b1056.
PATRICi32117349. VBIEscCol129921_1097.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61000 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74140.1.
AP009048 Genomic DNA. Translation: BAA35854.1.
PIRiE64848.
RefSeqiNP_415574.1. NC_000913.3.
WP_000749261.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y0GX-ray2.20A/B/C/D1-191[»]
ProteinModelPortaliP0A8X2.
SMRiP0A8X2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262844. 10 interactors.
IntActiP0A8X2. 4 interactors.
STRINGi511145.b1056.

2D gel databases

SWISS-2DPAGEP0A8X2.

Proteomic databases

EPDiP0A8X2.
PaxDbiP0A8X2.
PRIDEiP0A8X2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74140; AAC74140; b1056.
BAA35854; BAA35854; BAA35854.
GeneIDi946145.
KEGGiecj:JW1043.
eco:b1056.
PATRICi32117349. VBIEscCol129921_1097.

Organism-specific databases

EchoBASEiEB1767.
EcoGeneiEG11820. yceI.

Phylogenomic databases

eggNOGiENOG4108YYC. Bacteria.
COG2353. LUCA.
HOGENOMiHOG000262659.
InParanoidiP0A8X2.
OMAiGNYRAGF.
PhylomeDBiP0A8X2.

Enzyme and pathway databases

BioCyciEcoCyc:EG11820-MONOMER.
ECOL316407:JW1043-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0A8X2.
PROiP0A8X2.

Family and domain databases

Gene3Di2.40.128.110. 1 hit.
HAMAPiMF_00780. UPF0312. 1 hit.
InterProiIPR007372. Lipid/polyisoprenoid-bd_YceI.
IPR023480. UPF0312/YceI.
[Graphical view]
PfamiPF04264. YceI. 1 hit.
[Graphical view]
SMARTiSM00867. YceI. 1 hit.
[Graphical view]
SUPFAMiSSF101874. SSF101874. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCEI_ECOLI
AccessioniPrimary (citable) accession number: P0A8X2
Secondary accession number(s): P37904
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: November 2, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.