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Protein

Protein YceI

Gene

yceI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11820-MONOMER.
ECOL316407:JW1043-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YceI
Gene namesi
Name:yceI
Ordered Locus Names:b1056, JW1043
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11820. yceI.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 22221 PublicationAdd
BLAST
Chaini23 – 191169Protein YceIPRO_0000036276Add
BLAST

Proteomic databases

EPDiP0A8X2.
PaxDbiP0A8X2.
PRIDEiP0A8X2.

2D gel databases

SWISS-2DPAGEP0A8X2.

Interactioni

Protein-protein interaction databases

BioGridi4262844. 10 interactions.
IntActiP0A8X2. 4 interactions.
STRINGi511145.b1056.

Structurei

Secondary structure

1
191
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi24 – 274Combined sources
Turni29 – 324Combined sources
Beta strandi34 – 429Combined sources
Turni43 – 453Combined sources
Beta strandi46 – 527Combined sources
Beta strandi55 – 606Combined sources
Helixi66 – 683Combined sources
Beta strandi70 – 767Combined sources
Helixi77 – 793Combined sources
Helixi85 – 928Combined sources
Turni94 – 974Combined sources
Turni99 – 1013Combined sources
Beta strandi104 – 11512Combined sources
Beta strandi118 – 12710Combined sources
Beta strandi130 – 14516Combined sources
Beta strandi151 – 16212Combined sources
Helixi164 – 1663Combined sources
Helixi174 – 1763Combined sources
Beta strandi177 – 18913Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y0GX-ray2.20A/B/C/D1-191[»]
ProteinModelPortaliP0A8X2.
SMRiP0A8X2. Positions 23-191.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A8X2.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0312 family. Type 1 subfamily.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108YYC. Bacteria.
COG2353. LUCA.
HOGENOMiHOG000262659.
InParanoidiP0A8X2.
OMAiGNYRAGF.
OrthoDBiEOG6HB9W0.
PhylomeDBiP0A8X2.

Family and domain databases

Gene3Di2.40.128.110. 1 hit.
HAMAPiMF_00780. UPF0312.
InterProiIPR007372. Lipid/polyisoprenoid-bd_YceI.
IPR023480. UPF0312/YceI.
[Graphical view]
PfamiPF04264. YceI. 1 hit.
[Graphical view]
SMARTiSM00867. YceI. 1 hit.
[Graphical view]
SUPFAMiSSF101874. SSF101874. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0A8X2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSLLGLTF ASLMFSAGSA VAADYKIDKE GQHAFVNFRI QHLGYSWLYG
60 70 80 90 100
TFKDFDGTFT FDEKNPAADK VNVTINTTSV DTNHAERDKH LRSADFLNTA
110 120 130 140 150
KYPQATFTST SVKKDGDELD ITGDLTLNGV TKPVTLEAKL IGQGDDPWGG
160 170 180 190
KRAGFEAEGK IKLKDFNIKT DLGPASQEVD LIISVEGVQQ K
Length:191
Mass (Da):20,912
Last modified:June 7, 2005 - v1
Checksum:i56C795ACA27DF3CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61000 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74140.1.
AP009048 Genomic DNA. Translation: BAA35854.1.
PIRiE64848.
RefSeqiNP_415574.1. NC_000913.3.
WP_000749261.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74140; AAC74140; b1056.
BAA35854; BAA35854; BAA35854.
GeneIDi946145.
KEGGiecj:JW1043.
eco:b1056.
PATRICi32117349. VBIEscCol129921_1097.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61000 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74140.1.
AP009048 Genomic DNA. Translation: BAA35854.1.
PIRiE64848.
RefSeqiNP_415574.1. NC_000913.3.
WP_000749261.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y0GX-ray2.20A/B/C/D1-191[»]
ProteinModelPortaliP0A8X2.
SMRiP0A8X2. Positions 23-191.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262844. 10 interactions.
IntActiP0A8X2. 4 interactions.
STRINGi511145.b1056.

2D gel databases

SWISS-2DPAGEP0A8X2.

Proteomic databases

EPDiP0A8X2.
PaxDbiP0A8X2.
PRIDEiP0A8X2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74140; AAC74140; b1056.
BAA35854; BAA35854; BAA35854.
GeneIDi946145.
KEGGiecj:JW1043.
eco:b1056.
PATRICi32117349. VBIEscCol129921_1097.

Organism-specific databases

EchoBASEiEB1767.
EcoGeneiEG11820. yceI.

Phylogenomic databases

eggNOGiENOG4108YYC. Bacteria.
COG2353. LUCA.
HOGENOMiHOG000262659.
InParanoidiP0A8X2.
OMAiGNYRAGF.
OrthoDBiEOG6HB9W0.
PhylomeDBiP0A8X2.

Enzyme and pathway databases

BioCyciEcoCyc:EG11820-MONOMER.
ECOL316407:JW1043-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0A8X2.
PROiP0A8X2.

Family and domain databases

Gene3Di2.40.128.110. 1 hit.
HAMAPiMF_00780. UPF0312.
InterProiIPR007372. Lipid/polyisoprenoid-bd_YceI.
IPR023480. UPF0312/YceI.
[Graphical view]
PfamiPF04264. YceI. 1 hit.
[Graphical view]
SMARTiSM00867. YceI. 1 hit.
[Graphical view]
SUPFAMiSSF101874. SSF101874. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing, mutational analysis, and transcriptional regulation of the Escherichia coli htrB gene."
    Karow M.L., Georgopoulos C.
    Mol. Microbiol. 5:2285-2292(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12."
    Link A.J., Robison K., Church G.M.
    Electrophoresis 18:1259-1313(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 23-34.
    Strain: K12 / EMG2.
  6. Rudd K.E.
    Unpublished observations (FEB-1994)
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYCEI_ECOLI
AccessioniPrimary (citable) accession number: P0A8X2
Secondary accession number(s): P37904
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: March 16, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.