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Protein

UPF0307 protein YjgA

Gene

yjgA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11410-MONOMER.
ECOL316407:JW4193-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0307 protein YjgA
Alternative name(s):
x96 protein
Gene namesi
Name:yjgA
Ordered Locus Names:b4234, JW4193
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11410. yjgA.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183UPF0307 protein YjgAPRO_0000208213Add
BLAST

Proteomic databases

PaxDbiP0A8X0.
PRIDEiP0A8X0.

Interactioni

Protein-protein interaction databases

DIPiDIP-47895N.
IntActiP0A8X0. 5 interactions.
STRINGi511145.b4234.

Structurei

3D structure databases

ProteinModelPortaliP0A8X0.
SMRiP0A8X0. Positions 42-180.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi15 – 239Asp/Glu-rich (acidic)

Sequence similaritiesi

Belongs to the UPF0307 family.Curated

Phylogenomic databases

eggNOGiCOG3028.
HOGENOMiHOG000013875.
InParanoidiP0A8X0.
KOiK09889.
OMAiWPNADRQ.
OrthoDBiEOG6RJV5H.
PhylomeDBiP0A8X0.

Family and domain databases

Gene3Di1.10.60.30. 2 hits.
HAMAPiMF_00765. UPF0307.
InterProiIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamiPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFiPIRSF016183. UCP016183. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8X0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAEIVDLG
60 70 80 90 100
KNALDKIPLD ADLRAAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA
110 120 130 140 150
LDKLKNRHNQ QVVLFHKLEN LRDRLIDQGD DAIAEVLNLW PDADRQQLRT
160 170 180
LIRNAKKEKE GNKPPKSARQ IFQYLRELAE NEG
Length:183
Mass (Da):21,359
Last modified:June 7, 2005 - v1
Checksum:i069CF47719CD59CB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M95096 Genomic DNA. Translation: AAA24760.1.
D44452 Genomic DNA. Translation: BAA07914.1.
U14003 Genomic DNA. Translation: AAA97131.1.
U00096 Genomic DNA. Translation: AAC77191.1.
AP009048 Genomic DNA. Translation: BAE78234.1.
PIRiS56460.
RefSeqiNP_418655.1. NC_000913.3.
WP_000166270.1. NZ_CP010445.1.

Genome annotation databases

EnsemblBacteriaiAAC77191; AAC77191; b4234.
BAE78234; BAE78234; BAE78234.
GeneIDi948751.
KEGGieco:b4234.
PATRICi32124041. VBIEscCol129921_4365.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M95096 Genomic DNA. Translation: AAA24760.1.
D44452 Genomic DNA. Translation: BAA07914.1.
U14003 Genomic DNA. Translation: AAA97131.1.
U00096 Genomic DNA. Translation: AAC77191.1.
AP009048 Genomic DNA. Translation: BAE78234.1.
PIRiS56460.
RefSeqiNP_418655.1. NC_000913.3.
WP_000166270.1. NZ_CP010445.1.

3D structure databases

ProteinModelPortaliP0A8X0.
SMRiP0A8X0. Positions 42-180.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-47895N.
IntActiP0A8X0. 5 interactions.
STRINGi511145.b4234.

Proteomic databases

PaxDbiP0A8X0.
PRIDEiP0A8X0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77191; AAC77191; b4234.
BAE78234; BAE78234; BAE78234.
GeneIDi948751.
KEGGieco:b4234.
PATRICi32124041. VBIEscCol129921_4365.

Organism-specific databases

EchoBASEiEB1382.
EcoGeneiEG11410. yjgA.

Phylogenomic databases

eggNOGiCOG3028.
HOGENOMiHOG000013875.
InParanoidiP0A8X0.
KOiK09889.
OMAiWPNADRQ.
OrthoDBiEOG6RJV5H.
PhylomeDBiP0A8X0.

Enzyme and pathway databases

BioCyciEcoCyc:EG11410-MONOMER.
ECOL316407:JW4193-MONOMER.

Miscellaneous databases

PROiP0A8X0.

Family and domain databases

Gene3Di1.10.60.30. 2 hits.
HAMAPiMF_00765. UPF0307.
InterProiIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamiPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFiPIRSF016183. UCP016183. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence and polypeptide product of x96, a gene mapping at min 96 of the Escherichia coli genetic map."
    Rodriguez-Sainz M.C., Moreno F.
    Submitted (JUN-1992) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Evidence for involvement of Escherichia coli genes pmbA, csrA and a previously unrecognized gene tldD, in the control of DNA gyrase by letD (ccdB) of sex factor F."
    Murayama N., Shimizu H., Takiguchi S., Baba Y., Amino H., Horiuchi T., Sekimizu K., Miki T.
    J. Mol. Biol. 256:483-502(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  3. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  6. "The Escherichia coli GTPase CgtAE is involved in late steps of large ribosome assembly."
    Jiang M., Datta K., Walker A., Strahler J., Bagamasbad P., Andrews P.C., Maddock J.R.
    J. Bacteriol. 188:6757-6770(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION, ASSOCIATION WITH THE 50S RIBOSOMAL SUBUNIT.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYJGA_ECOLI
AccessioniPrimary (citable) accession number: P0A8X0
Secondary accession number(s): P26650, Q2M672
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: July 22, 2015
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.