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P0A8X0

- YJGA_ECOLI

UniProt

P0A8X0 - YJGA_ECOLI

Protein

UPF0307 protein YjgA

Gene

yjgA

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (07 Jun 2005)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciEcoCyc:EG11410-MONOMER.
    ECOL316407:JW4193-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0307 protein YjgA
    Alternative name(s):
    x96 protein
    Gene namesi
    Name:yjgA
    Ordered Locus Names:b4234, JW4193
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG11410. yjgA.

    Subcellular locationi

    Cytoplasm 1 Publication
    Note: Has been seen to comigrate with the 50S ribosomal subunit in sucrose gradients.

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 183183UPF0307 protein YjgAPRO_0000208213Add
    BLAST

    Proteomic databases

    PaxDbiP0A8X0.
    PRIDEiP0A8X0.

    Expressioni

    Gene expression databases

    GenevestigatoriP0A8X0.

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-47895N.
    IntActiP0A8X0. 5 interactions.
    STRINGi511145.b4234.

    Structurei

    3D structure databases

    ProteinModelPortaliP0A8X0.
    SMRiP0A8X0. Positions 42-180.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi15 – 239Asp/Glu-rich (acidic)

    Sequence similaritiesi

    Belongs to the UPF0307 family.Curated

    Phylogenomic databases

    eggNOGiCOG3028.
    HOGENOMiHOG000013875.
    KOiK09889.
    OMAiKAANKPP.
    OrthoDBiEOG6RJV5H.
    PhylomeDBiP0A8X0.

    Family and domain databases

    Gene3Di1.10.60.30. 2 hits.
    HAMAPiMF_00765. UPF0307.
    InterProiIPR023153. PSPTO4464-like_domain.
    IPR006839. Ribosome-assoc_YjgA.
    [Graphical view]
    PfamiPF04751. DUF615. 1 hit.
    [Graphical view]
    PIRSFiPIRSF016183. UCP016183. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P0A8X0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAEIVDLG    50
    KNALDKIPLD ADLRAAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA 100
    LDKLKNRHNQ QVVLFHKLEN LRDRLIDQGD DAIAEVLNLW PDADRQQLRT 150
    LIRNAKKEKE GNKPPKSARQ IFQYLRELAE NEG 183
    Length:183
    Mass (Da):21,359
    Last modified:June 7, 2005 - v1
    Checksum:i069CF47719CD59CB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M95096 Genomic DNA. Translation: AAA24760.1.
    D44452 Genomic DNA. Translation: BAA07914.1.
    U14003 Genomic DNA. Translation: AAA97131.1.
    U00096 Genomic DNA. Translation: AAC77191.1.
    AP009048 Genomic DNA. Translation: BAE78234.1.
    PIRiS56460.
    RefSeqiNP_418655.1. NC_000913.3.
    YP_492375.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC77191; AAC77191; b4234.
    BAE78234; BAE78234; BAE78234.
    GeneIDi12931641.
    948751.
    KEGGiecj:Y75_p4119.
    eco:b4234.
    PATRICi32124041. VBIEscCol129921_4365.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M95096 Genomic DNA. Translation: AAA24760.1 .
    D44452 Genomic DNA. Translation: BAA07914.1 .
    U14003 Genomic DNA. Translation: AAA97131.1 .
    U00096 Genomic DNA. Translation: AAC77191.1 .
    AP009048 Genomic DNA. Translation: BAE78234.1 .
    PIRi S56460.
    RefSeqi NP_418655.1. NC_000913.3.
    YP_492375.1. NC_007779.1.

    3D structure databases

    ProteinModelPortali P0A8X0.
    SMRi P0A8X0. Positions 42-180.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-47895N.
    IntActi P0A8X0. 5 interactions.
    STRINGi 511145.b4234.

    Proteomic databases

    PaxDbi P0A8X0.
    PRIDEi P0A8X0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC77191 ; AAC77191 ; b4234 .
    BAE78234 ; BAE78234 ; BAE78234 .
    GeneIDi 12931641.
    948751.
    KEGGi ecj:Y75_p4119.
    eco:b4234.
    PATRICi 32124041. VBIEscCol129921_4365.

    Organism-specific databases

    EchoBASEi EB1382.
    EcoGenei EG11410. yjgA.

    Phylogenomic databases

    eggNOGi COG3028.
    HOGENOMi HOG000013875.
    KOi K09889.
    OMAi KAANKPP.
    OrthoDBi EOG6RJV5H.
    PhylomeDBi P0A8X0.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG11410-MONOMER.
    ECOL316407:JW4193-MONOMER.

    Miscellaneous databases

    PROi P0A8X0.

    Gene expression databases

    Genevestigatori P0A8X0.

    Family and domain databases

    Gene3Di 1.10.60.30. 2 hits.
    HAMAPi MF_00765. UPF0307.
    InterProi IPR023153. PSPTO4464-like_domain.
    IPR006839. Ribosome-assoc_YjgA.
    [Graphical view ]
    Pfami PF04751. DUF615. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF016183. UCP016183. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence and polypeptide product of x96, a gene mapping at min 96 of the Escherichia coli genetic map."
      Rodriguez-Sainz M.C., Moreno F.
      Submitted (JUN-1992) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Evidence for involvement of Escherichia coli genes pmbA, csrA and a previously unrecognized gene tldD, in the control of DNA gyrase by letD (ccdB) of sex factor F."
      Murayama N., Shimizu H., Takiguchi S., Baba Y., Amino H., Horiuchi T., Sekimizu K., Miki T.
      J. Mol. Biol. 256:483-502(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: K12.
    3. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
      Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
      Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    6. "The Escherichia coli GTPase CgtAE is involved in late steps of large ribosome assembly."
      Jiang M., Datta K., Walker A., Strahler J., Bagamasbad P., Andrews P.C., Maddock J.R.
      J. Bacteriol. 188:6757-6770(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION, ASSOCIATION WITH THE 50S RIBOSOMAL SUBUNIT.
      Strain: K12 / MG1655 / ATCC 47076.

    Entry informationi

    Entry nameiYJGA_ECOLI
    AccessioniPrimary (citable) accession number: P0A8X0
    Secondary accession number(s): P26650, Q2M672
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 7, 2005
    Last sequence update: June 7, 2005
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. SIMILARITY comments
      Index of protein domains and families
    3. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries

    External Data

    Dasty 3