P0A8X0 (YJGA_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0307 protein YjgA

Alternative name(s):
x96 protein

Gene names

Name:	yjgA
Ordered Locus Names:	b4234, JW4193

Organism

Escherichia coli (strain K12) [Reference proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	183 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Subcellular location	Cytoplasm. Note: Has been seen to comigrate with the 50S ribosomal subunit in sucrose gradients. Ref.6
Sequence similarities	Belongs to the UPF0307 family.

Ontologies

Keywords
Cellular component	Cytoplasm
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 183	183	UPF0307 protein YjgA HAMAP-Rule MF_00765		PRO_0000208213
Regions
	Compositional bias	15 – 23	9	Asp/Glu-rich (acidic) HAMAP-Rule MF_00765

Sequences

	Sequence		Length	Mass (Da)
	P0A8X0 [UniParc]. Last modified June 7, 2005. Version 1. Checksum: 069CF47719CD59CB	FASTA	183	21,359
	10 20 30 40 50 60 MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAEIVDLG KNALDKIPLD 70 80 90 100 110 120 ADLRAAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA LDKLKNRHNQ QVVLFHKLEN 130 140 150 160 170 180 LRDRLIDQGD DAIAEVLNLW PDADRQQLRT LIRNAKKEKE GNKPPKSARQ IFQYLRELAE NEG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Nucleotide sequence and polypeptide product of x96, a gene mapping at min 96 of the Escherichia coli genetic map." Rodriguez-Sainz M.C., Moreno F. Submitted (JUN-1992) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Evidence for involvement of Escherichia coli genes pmbA, csrA and a previously unrecognized gene tldD, in the control of DNA gyrase by letD (ccdB) of sex factor F." Murayama N., Shimizu H., Takiguchi S., Baba Y., Amino H., Horiuchi T., Sekimizu K., Miki T. J. Mol. Biol. 256:483-502(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12.
[3]	"Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes." Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R. Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[4]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[5]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[6]	"The Escherichia coli GTPase CgtAE is involved in late steps of large ribosome assembly." Jiang M., Datta K., Walker A., Strahler J., Bagamasbad P., Andrews P.C., Maddock J.R. J. Bacteriol. 188:6757-6770(2006) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION, ASSOCIATION WITH THE 50S RIBOSOMAL SUBUNIT. Strain: K12 / MG1655 / ATCC 47076.

Cross-references

Sequence databases
EMBL GenBank DDBJ	M95096 Genomic DNA. Translation: AAA24760.1. D44452 Genomic DNA. Translation: BAA07914.1. U14003 Genomic DNA. Translation: AAA97131.1. U00096 Genomic DNA. Translation: AAC77191.1. AP009048 Genomic DNA. Translation: BAE78234.1.
PIR	S56460.
RefSeq	NP_418655.1. NC_000913.2. YP_492375.1. NC_007779.1.
3D structure databases
ProteinModelPortal	P0A8X0.
SMR	P0A8X0. Positions 42-180.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-47895N.
IntAct	P0A8X0. 4 interactions.
STRING	511145.b4234.
Proteomic databases
PaxDb	P0A8X0.
PRIDE	P0A8X0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAC77191; AAC77191; b4234. BAE78234; BAE78234; BAE78234.
GeneID	12931641. 948751.
KEGG	ecj:Y75_p4119. eco:b4234.
PATRIC	32124041. VBIEscCol129921_4365.
Organism-specific databases
EchoBASE	EB1382.
EcoGene	EG11410. yjgA.
Phylogenomic databases
eggNOG	COG3028.
HOGENOM	HOG000013875.
KO	K09889.
OMA	KAANKPP.
ProtClustDB	PRK05255.
Enzyme and pathway databases
BioCyc	EcoCyc:EG11410-MONOMER. ECOL316407:JW4193-MONOMER.
Gene expression databases
Genevestigator	P0A8X0.
Family and domain databases
Gene3D	1.10.60.30. 2 hits.
HAMAP	MF_00765. UPF0307.
InterPro	IPR023153. PSPTO4464-like_domain. IPR006839. Ribosome-assoc_YjgA. [Graphical view]
Pfam	PF04751. DUF615. 1 hit. [Graphical view]
PIRSF	PIRSF016183. UCP016183. 1 hit.
ProtoNet	Search...

Entry information

Entry name

YJGA_ECOLI

Accession

Primary (citable) accession number: P0A8X0
Secondary accession number(s): P26650, Q2M672

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 7, 2005
Last sequence update:	June 7, 2005
Last modified:	May 1, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program