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P0A8X0 (YJGA_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
UPF0307 protein YjgA
Alternative name(s):
x96 protein
Gene names
Name:yjgA
Ordered Locus Names:b4234, JW4193
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length183 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subcellular location

Cytoplasm. Note: Has been seen to comigrate with the 50S ribosomal subunit in sucrose gradients. Ref.6

Sequence similarities

Belongs to the UPF0307 family.

Ontologies

Keywords
   Cellular componentCytoplasm
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 183183UPF0307 protein YjgA HAMAP-Rule MF_00765
PRO_0000208213

Regions

Compositional bias15 – 239Asp/Glu-rich (acidic) HAMAP-Rule MF_00765

Sequences

Sequence LengthMass (Da)Tools
P0A8X0 [UniParc].

Last modified June 7, 2005. Version 1.
Checksum: 069CF47719CD59CB

FASTA18321,359
        10         20         30         40         50         60 
MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAEIVDLG KNALDKIPLD 

        70         80         90        100        110        120 
ADLRAAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA LDKLKNRHNQ QVVLFHKLEN 

       130        140        150        160        170        180 
LRDRLIDQGD DAIAEVLNLW PDADRQQLRT LIRNAKKEKE GNKPPKSARQ IFQYLRELAE 


NEG 

« Hide

References

« Hide 'large scale' references
[1]"Nucleotide sequence and polypeptide product of x96, a gene mapping at min 96 of the Escherichia coli genetic map."
Rodriguez-Sainz M.C., Moreno F.
Submitted (JUN-1992) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Evidence for involvement of Escherichia coli genes pmbA, csrA and a previously unrecognized gene tldD, in the control of DNA gyrase by letD (ccdB) of sex factor F."
Murayama N., Shimizu H., Takiguchi S., Baba Y., Amino H., Horiuchi T., Sekimizu K., Miki T.
J. Mol. Biol. 256:483-502(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12.
[3]"Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[4]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[5]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[6]"The Escherichia coli GTPase CgtAE is involved in late steps of large ribosome assembly."
Jiang M., Datta K., Walker A., Strahler J., Bagamasbad P., Andrews P.C., Maddock J.R.
J. Bacteriol. 188:6757-6770(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION, ASSOCIATION WITH THE 50S RIBOSOMAL SUBUNIT.
Strain: K12 / MG1655 / ATCC 47076.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M95096 Genomic DNA. Translation: AAA24760.1.
D44452 Genomic DNA. Translation: BAA07914.1.
U14003 Genomic DNA. Translation: AAA97131.1.
U00096 Genomic DNA. Translation: AAC77191.1.
AP009048 Genomic DNA. Translation: BAE78234.1.
PIRS56460.
RefSeqNP_418655.1. NC_000913.3.
YP_492375.1. NC_007779.1.

3D structure databases

ProteinModelPortalP0A8X0.
SMRP0A8X0. Positions 42-180.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-47895N.
IntActP0A8X0. 4 interactions.
STRING511145.b4234.

Proteomic databases

PaxDbP0A8X0.
PRIDEP0A8X0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC77191; AAC77191; b4234.
BAE78234; BAE78234; BAE78234.
GeneID12931641.
948751.
KEGGecj:Y75_p4119.
eco:b4234.
PATRIC32124041. VBIEscCol129921_4365.

Organism-specific databases

EchoBASEEB1382.
EcoGeneEG11410. yjgA.

Phylogenomic databases

eggNOGCOG3028.
HOGENOMHOG000013875.
KOK09889.
OMAREMHALQ.
OrthoDBEOG6RJV5H.
ProtClustDBPRK05255.

Enzyme and pathway databases

BioCycEcoCyc:EG11410-MONOMER.
ECOL316407:JW4193-MONOMER.

Gene expression databases

GenevestigatorP0A8X0.

Family and domain databases

Gene3D1.10.60.30. 2 hits.
HAMAPMF_00765. UPF0307.
InterProIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFPIRSF016183. UCP016183. 1 hit.
ProtoNetSearch...

Other

PROP0A8X0.

Entry information

Entry nameYJGA_ECOLI
AccessionPrimary (citable) accession number: P0A8X0
Secondary accession number(s): P26650, Q2M672
Entry history
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: March 19, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene