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P0A8X0

- YJGA_ECOLI

UniProt

P0A8X0 - YJGA_ECOLI

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Protein
UPF0307 protein YjgA
Gene
yjgA, b4234, JW4193
Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11410-MONOMER.
ECOL316407:JW4193-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0307 protein YjgA
Alternative name(s):
x96 protein
Gene namesi
Name:yjgA
Ordered Locus Names:b4234, JW4193
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11410. yjgA.

Subcellular locationi

Cytoplasm
Note: Has been seen to comigrate with the 50S ribosomal subunit in sucrose gradients.1 Publication

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183UPF0307 protein YjgAUniRule annotation
PRO_0000208213Add
BLAST

Proteomic databases

PaxDbiP0A8X0.
PRIDEiP0A8X0.

Expressioni

Gene expression databases

GenevestigatoriP0A8X0.

Interactioni

Protein-protein interaction databases

DIPiDIP-47895N.
IntActiP0A8X0. 5 interactions.
STRINGi511145.b4234.

Structurei

3D structure databases

ProteinModelPortaliP0A8X0.
SMRiP0A8X0. Positions 42-180.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi15 – 239Asp/Glu-rich (acidic)UniRule annotation

Sequence similaritiesi

Belongs to the UPF0307 family.

Phylogenomic databases

eggNOGiCOG3028.
HOGENOMiHOG000013875.
KOiK09889.
OMAiKAANKPP.
OrthoDBiEOG6RJV5H.
PhylomeDBiP0A8X0.

Family and domain databases

Gene3Di1.10.60.30. 2 hits.
HAMAPiMF_00765. UPF0307.
InterProiIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamiPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFiPIRSF016183. UCP016183. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8X0-1 [UniParc]FASTAAdd to Basket

« Hide

MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAEIVDLG    50
KNALDKIPLD ADLRAAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA 100
LDKLKNRHNQ QVVLFHKLEN LRDRLIDQGD DAIAEVLNLW PDADRQQLRT 150
LIRNAKKEKE GNKPPKSARQ IFQYLRELAE NEG 183
Length:183
Mass (Da):21,359
Last modified:June 7, 2005 - v1
Checksum:i069CF47719CD59CB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M95096 Genomic DNA. Translation: AAA24760.1.
D44452 Genomic DNA. Translation: BAA07914.1.
U14003 Genomic DNA. Translation: AAA97131.1.
U00096 Genomic DNA. Translation: AAC77191.1.
AP009048 Genomic DNA. Translation: BAE78234.1.
PIRiS56460.
RefSeqiNP_418655.1. NC_000913.3.
YP_492375.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC77191; AAC77191; b4234.
BAE78234; BAE78234; BAE78234.
GeneIDi12931641.
948751.
KEGGiecj:Y75_p4119.
eco:b4234.
PATRICi32124041. VBIEscCol129921_4365.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M95096 Genomic DNA. Translation: AAA24760.1 .
D44452 Genomic DNA. Translation: BAA07914.1 .
U14003 Genomic DNA. Translation: AAA97131.1 .
U00096 Genomic DNA. Translation: AAC77191.1 .
AP009048 Genomic DNA. Translation: BAE78234.1 .
PIRi S56460.
RefSeqi NP_418655.1. NC_000913.3.
YP_492375.1. NC_007779.1.

3D structure databases

ProteinModelPortali P0A8X0.
SMRi P0A8X0. Positions 42-180.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-47895N.
IntActi P0A8X0. 5 interactions.
STRINGi 511145.b4234.

Proteomic databases

PaxDbi P0A8X0.
PRIDEi P0A8X0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC77191 ; AAC77191 ; b4234 .
BAE78234 ; BAE78234 ; BAE78234 .
GeneIDi 12931641.
948751.
KEGGi ecj:Y75_p4119.
eco:b4234.
PATRICi 32124041. VBIEscCol129921_4365.

Organism-specific databases

EchoBASEi EB1382.
EcoGenei EG11410. yjgA.

Phylogenomic databases

eggNOGi COG3028.
HOGENOMi HOG000013875.
KOi K09889.
OMAi KAANKPP.
OrthoDBi EOG6RJV5H.
PhylomeDBi P0A8X0.

Enzyme and pathway databases

BioCyci EcoCyc:EG11410-MONOMER.
ECOL316407:JW4193-MONOMER.

Miscellaneous databases

PROi P0A8X0.

Gene expression databases

Genevestigatori P0A8X0.

Family and domain databases

Gene3Di 1.10.60.30. 2 hits.
HAMAPi MF_00765. UPF0307.
InterProi IPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view ]
Pfami PF04751. DUF615. 1 hit.
[Graphical view ]
PIRSFi PIRSF016183. UCP016183. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence and polypeptide product of x96, a gene mapping at min 96 of the Escherichia coli genetic map."
    Rodriguez-Sainz M.C., Moreno F.
    Submitted (JUN-1992) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Evidence for involvement of Escherichia coli genes pmbA, csrA and a previously unrecognized gene tldD, in the control of DNA gyrase by letD (ccdB) of sex factor F."
    Murayama N., Shimizu H., Takiguchi S., Baba Y., Amino H., Horiuchi T., Sekimizu K., Miki T.
    J. Mol. Biol. 256:483-502(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  3. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  6. "The Escherichia coli GTPase CgtAE is involved in late steps of large ribosome assembly."
    Jiang M., Datta K., Walker A., Strahler J., Bagamasbad P., Andrews P.C., Maddock J.R.
    J. Bacteriol. 188:6757-6770(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION, ASSOCIATION WITH THE 50S RIBOSOMAL SUBUNIT.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYJGA_ECOLI
AccessioniPrimary (citable) accession number: P0A8X0
Secondary accession number(s): P26650, Q2M672
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: July 9, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

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