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Protein

UPF0304 protein YfbU

Gene

yfbU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7188-MONOMER.
ECOL316407:JW2291-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0304 protein YfbU
Gene namesi
Name:yfbU
Ordered Locus Names:b2294, JW2291
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14105. yfbU.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 164164UPF0304 protein YfbUPRO_0000218162Add
BLAST

Proteomic databases

EPDiP0A8W8.
PaxDbiP0A8W8.
PRIDEiP0A8W8.

Expressioni

Inductioni

Only a leaderless mRNA has been detected in vivo, the first nucleotide is the beginning of the start codon.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4262966. 4 interactions.
DIPiDIP-48184N.
IntActiP0A8W8. 9 interactions.
STRINGi511145.b2294.

Structurei

3D structure databases

ProteinModelPortaliP0A8W8.
SMRiP0A8W8. Positions 1-164.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0304 family.Curated

Phylogenomic databases

eggNOGiENOG4105XWI. Bacteria.
COG3013. LUCA.
HOGENOMiHOG000272587.
InParanoidiP0A8W8.
KOiK09161.
OMAiDKADHHF.

Family and domain databases

Gene3Di1.10.287.680. 1 hit.
1.10.3190.10. 1 hit.
HAMAPiMF_00762. UPF0304. 1 hit.
InterProiIPR005587. UPF0304_YfbU.
IPR023146. YfbU_alpha-helical.
IPR023145. YfbU_helix-hairpin.
[Graphical view]
PfamiPF03887. YfbU. 1 hit.
[Graphical view]
PIRSFiPIRSF006272. UCP006272. 1 hit.
ProDomiPD035118. YfbU. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P0A8W8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEMTNAQRLI LSNQYKMMTM LDPANAERYR RLQTIIERGY GLQMRELDRE
60 70 80 90 100
FGELKEETCR TIIDIMEMYH ALHVSWSNLQ DQQSIDERRV TFLGFDAATE
110 120 130 140 150
ARYLGYVRFM VNVEGRYTHF DAGTHGFNAQ TPMWEKYQRM LNVWHACPRQ
160
YHLSANEINQ IINA
Length:164
Mass (Da):19,536
Last modified:June 7, 2005 - v1
Checksum:i5599DD48CB373921
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75354.2.
AP009048 Genomic DNA. Translation: BAE76685.1.
RefSeqiNP_416797.2. NC_000913.3.
WP_000426124.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75354; AAC75354; b2294.
BAE76685; BAE76685; BAE76685.
GeneIDi946767.
KEGGiecj:JW2291.
eco:b2294.
PATRICi32119957. VBIEscCol129921_2388.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75354.2.
AP009048 Genomic DNA. Translation: BAE76685.1.
RefSeqiNP_416797.2. NC_000913.3.
WP_000426124.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A8W8.
SMRiP0A8W8. Positions 1-164.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262966. 4 interactions.
DIPiDIP-48184N.
IntActiP0A8W8. 9 interactions.
STRINGi511145.b2294.

Proteomic databases

EPDiP0A8W8.
PaxDbiP0A8W8.
PRIDEiP0A8W8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75354; AAC75354; b2294.
BAE76685; BAE76685; BAE76685.
GeneIDi946767.
KEGGiecj:JW2291.
eco:b2294.
PATRICi32119957. VBIEscCol129921_2388.

Organism-specific databases

EchoBASEiEB3858.
EcoGeneiEG14105. yfbU.

Phylogenomic databases

eggNOGiENOG4105XWI. Bacteria.
COG3013. LUCA.
HOGENOMiHOG000272587.
InParanoidiP0A8W8.
KOiK09161.
OMAiDKADHHF.

Enzyme and pathway databases

BioCyciEcoCyc:G7188-MONOMER.
ECOL316407:JW2291-MONOMER.

Miscellaneous databases

PROiP0A8W8.

Family and domain databases

Gene3Di1.10.287.680. 1 hit.
1.10.3190.10. 1 hit.
HAMAPiMF_00762. UPF0304. 1 hit.
InterProiIPR005587. UPF0304_YfbU.
IPR023146. YfbU_alpha-helical.
IPR023145. YfbU_helix-hairpin.
[Graphical view]
PfamiPF03887. YfbU. 1 hit.
[Graphical view]
PIRSFiPIRSF006272. UCP006272. 1 hit.
ProDomiPD035118. YfbU. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYFBU_ECOLI
AccessioniPrimary (citable) accession number: P0A8W8
Secondary accession number(s): P76492, Q2MAM1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: September 7, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.