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Protein

UPF0283 membrane protein YcjF

Gene

ycjF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12870-MONOMER.
ECOL316407:JW1315-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0283 membrane protein YcjF
Gene namesi
Name:ycjF
Ordered Locus Names:b1322, JW1315
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12870. ycjF.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 6969PeriplasmicSequence analysisAdd
BLAST
Transmembranei70 – 9021HelicalSequence analysisAdd
BLAST
Topological domaini91 – 999CytoplasmicSequence analysis
Transmembranei100 – 12021HelicalSequence analysisAdd
BLAST
Topological domaini121 – 21292PeriplasmicSequence analysisAdd
BLAST
Transmembranei213 – 23321HelicalSequence analysisAdd
BLAST
Topological domaini234 – 353120CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 353353UPF0283 membrane protein YcjFPRO_0000214172Add
BLAST

Proteomic databases

PaxDbiP0A8R7.
PRIDEiP0A8R7.

Interactioni

Protein-protein interaction databases

BioGridi4260149. 10 interactions.
DIPiDIP-48099N.
IntActiP0A8R7. 5 interactions.
MINTiMINT-1265032.
STRINGi511145.b1322.

Structurei

3D structure databases

ProteinModelPortaliP0A8R7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0283 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4106K28. Bacteria.
COG3768. LUCA.
HOGENOMiHOG000276547.
InParanoidiP0A8R7.
KOiK08990.
OMAiWRNIRLV.

Family and domain databases

HAMAPiMF_01085. UPF0283. 1 hit.
InterProiIPR021147. DUF697.
IPR006507. UPF0283.
[Graphical view]
PfamiPF05128. DUF697. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01620. hyp_HI0043. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8R7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEPLKPRID FDGPLEVDQN PKFRAQQTFD ENQAQNFAPA TLDEAQEEEG
60 70 80 90 100
QVEAVMDAAL RPKRSLWRKM VMGGLALFGA SVVGQGVQWT MNAWQTQDWV
110 120 130 140 150
ALGGCAAGAL IIGAGVGSVV TEWRRLWRLR QRAHERDEAR DLLHSHGTGK
160 170 180 190 200
GRAFCEKLAQ QAGIDQSHPA LQRWYASIHE TQNDREVVSL YAHLVQPVLD
210 220 230 240 250
AQARREISRS AAESTLMIAV SPLALVDMAF IAWRNLRLIN RIATLYGIEL
260 270 280 290 300
GYYSRLRLFK LVLLNIAFAG ASELVREVGM DWMSQDLAAR LSTRAAQGIG
310 320 330 340 350
AGLLTARLGI KAMELCRPLP WIDDDKPRLG DFRRQLIGQV KETLQKGKTP

SEK
Length:353
Mass (Da):39,392
Last modified:June 7, 2005 - v1
Checksum:i6CEF0B857997515D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti349 – 3491T → S (PubMed:3001057).Curated
Sequence conflicti351 – 3533SEK → AKNNAISGADRISLRRSARF SVFVSMIVDRNLPAIQIVSY HHINCSFFR (PubMed:3001057).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74404.1.
AP009048 Genomic DNA. Translation: BAA14903.1.
M12114 Genomic DNA. No translation available.
PIRiE64881.
RefSeqiNP_415838.1. NC_000913.3.
WP_000138728.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74404; AAC74404; b1322.
BAA14903; BAA14903; BAA14903.
GeneIDi945878.
KEGGiecj:JW1315.
eco:b1322.
PATRICi32117918. VBIEscCol129921_1379.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74404.1.
AP009048 Genomic DNA. Translation: BAA14903.1.
M12114 Genomic DNA. No translation available.
PIRiE64881.
RefSeqiNP_415838.1. NC_000913.3.
WP_000138728.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A8R7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260149. 10 interactions.
DIPiDIP-48099N.
IntActiP0A8R7. 5 interactions.
MINTiMINT-1265032.
STRINGi511145.b1322.

Proteomic databases

PaxDbiP0A8R7.
PRIDEiP0A8R7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74404; AAC74404; b1322.
BAA14903; BAA14903; BAA14903.
GeneIDi945878.
KEGGiecj:JW1315.
eco:b1322.
PATRICi32117918. VBIEscCol129921_1379.

Organism-specific databases

EchoBASEiEB2711.
EcoGeneiEG12870. ycjF.

Phylogenomic databases

eggNOGiENOG4106K28. Bacteria.
COG3768. LUCA.
HOGENOMiHOG000276547.
InParanoidiP0A8R7.
KOiK08990.
OMAiWRNIRLV.

Enzyme and pathway databases

BioCyciEcoCyc:EG12870-MONOMER.
ECOL316407:JW1315-MONOMER.

Miscellaneous databases

PROiP0A8R7.

Family and domain databases

HAMAPiMF_01085. UPF0283. 1 hit.
InterProiIPR021147. DUF697.
IPR006507. UPF0283.
[Graphical view]
PfamiPF05128. DUF697. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01620. hyp_HI0043. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCJF_ECOLI
AccessioniPrimary (citable) accession number: P0A8R7
Secondary accession number(s): P45525, P77177
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.