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Protein

UPF0283 membrane protein YcjF

Gene

ycjF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12870-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0283 membrane protein YcjF
Gene namesi
Name:ycjF
Ordered Locus Names:b1322, JW1315
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12870 ycjF

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 69PeriplasmicSequence analysisAdd BLAST69
Transmembranei70 – 90HelicalSequence analysisAdd BLAST21
Topological domaini91 – 99CytoplasmicSequence analysis9
Transmembranei100 – 120HelicalSequence analysisAdd BLAST21
Topological domaini121 – 212PeriplasmicSequence analysisAdd BLAST92
Transmembranei213 – 233HelicalSequence analysisAdd BLAST21
Topological domaini234 – 353CytoplasmicSequence analysisAdd BLAST120

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002141721 – 353UPF0283 membrane protein YcjFAdd BLAST353

Proteomic databases

PaxDbiP0A8R7
PRIDEiP0A8R7

Interactioni

Protein-protein interaction databases

BioGridi4260149, 14 interactors
DIPiDIP-48099N
IntActiP0A8R7, 9 interactors
STRINGi316385.ECDH10B_1441

Structurei

3D structure databases

ProteinModelPortaliP0A8R7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0283 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4106K28 Bacteria
COG3768 LUCA
HOGENOMiHOG000276547
InParanoidiP0A8R7
KOiK08990
OMAiSLWRRMV

Family and domain databases

HAMAPiMF_01085 UPF0283, 1 hit
InterProiView protein in InterPro
IPR021147 DUF697
IPR006507 UPF0283
PANTHERiPTHR39342 PTHR39342, 1 hit
PfamiView protein in Pfam
PF05128 DUF697, 1 hit
TIGRFAMsiTIGR01620 hyp_HI0043, 1 hit

Sequencei

Sequence statusi: Complete.

P0A8R7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEPLKPRID FDGPLEVDQN PKFRAQQTFD ENQAQNFAPA TLDEAQEEEG
60 70 80 90 100
QVEAVMDAAL RPKRSLWRKM VMGGLALFGA SVVGQGVQWT MNAWQTQDWV
110 120 130 140 150
ALGGCAAGAL IIGAGVGSVV TEWRRLWRLR QRAHERDEAR DLLHSHGTGK
160 170 180 190 200
GRAFCEKLAQ QAGIDQSHPA LQRWYASIHE TQNDREVVSL YAHLVQPVLD
210 220 230 240 250
AQARREISRS AAESTLMIAV SPLALVDMAF IAWRNLRLIN RIATLYGIEL
260 270 280 290 300
GYYSRLRLFK LVLLNIAFAG ASELVREVGM DWMSQDLAAR LSTRAAQGIG
310 320 330 340 350
AGLLTARLGI KAMELCRPLP WIDDDKPRLG DFRRQLIGQV KETLQKGKTP

SEK
Length:353
Mass (Da):39,392
Last modified:June 7, 2005 - v1
Checksum:i6CEF0B857997515D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti349T → S (PubMed:3001057).Curated1
Sequence conflicti351 – 353SEK → AKNNAISGADRISLRRSARF SVFVSMIVDRNLPAIQIVSY HHINCSFFR (PubMed:3001057).Curated3

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74404.1
AP009048 Genomic DNA Translation: BAA14903.1
M12114 Genomic DNA No translation available.
PIRiE64881
RefSeqiNP_415838.1, NC_000913.3
WP_000138728.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74404; AAC74404; b1322
BAA14903; BAA14903; BAA14903
GeneIDi945878
KEGGiecj:JW1315
eco:b1322
PATRICifig|1411691.4.peg.956

Similar proteinsi

Entry informationi

Entry nameiYCJF_ECOLI
AccessioniPrimary (citable) accession number: P0A8R7
Secondary accession number(s): P45525, P77177
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: March 28, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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