P0A8L7 (YCIU_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0263 protein yciU

Gene names

Name:	yciU
Ordered Locus Names:	b1248, JW1240

Organism

Escherichia coli (strain K12)

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	109 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the UPF0263 family.

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
aceE	P0AFG8	2	EBI-544511,EBI-542683

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 109	109	UPF0263 protein yciU HAMAP MF_00680		PRO_0000072775

Sequences

	Sequence		Length	Mass (Da)
	P0A8L7 [UniParc]. Last modified June 7, 2005. Version 1. Checksum: 60DC364A35954FB7	FASTA	109	12,687
	10 20 30 40 50 60 MDMDLNNRLT EDETLEQAYD IFLELAADNL DPADVLLFNL QFEERGGAEL FDPAEDWQEH 70 80 90 100 VDFDLNPDFF AEVVIGLADS EDGEINDVFA RILLCREKDH KLCHIIWRE

References

[1]	"A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map." Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T., Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T., Mizobuchi K., Mori H., Mori T., Motomura K. , Nakade S., Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y., Wada C., Yamamoto Y., Horiuchi T. DNA Res. 3:363-377(1996) [PubMed: 9097039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00096 Genomic DNA. Translation: AAC74330.2. AP009048 Genomic DNA. Translation: BAA14780.1.
PIR	C64872.
RefSeq	NP_415764.4. NC_000913.2.
3D structure databases
ProteinModelPortal	P0A8L7.
SMR	P0A8L7. Positions 3-109.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-47882N.
IntAct	P0A8L7. 5 interactions.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBESCT00000004874; EBESCP00000004874; EBESCG00000003979. EBESCT00000016668; EBESCP00000015959; EBESCG00000015727.
GeneID	945819.
GenomeReviews	Gene locus JW1240 in contig AP009048_GR. Gene locus b1248 in contig U00096_GR.
KEGG	ecj:JW1240. eco:b1248.
PATRIC	32117756. VBIEscCol129921_1298.
Organism-specific databases
EchoBASE	EB4004.
EcoGene	EG14256. yciU.
Phylogenomic databases
eggNOG	COG3099.
GeneTree	EBGT00050000009038.
HOGENOM	HBG298413.
OMA	DIAYDIF.
ProtClustDB	PRK05094.
Enzyme and pathway databases
BioCyc	EcoCyc:G6633-MONOMER.
Gene expression databases
Genevestigator	P0A8L7.
Family and domain databases
HAMAP	MF_00680. UPF0263. [Tree]
InterPro	IPR007376. dsDNA_mimic_put. [Graphical view]
KO	K09901.
Pfam	PF04269. DUF440. 1 hit. [Graphical view]
PIRSF	PIRSF004916. UCP004916. 1 hit.
ProDom	PD020447. dsDNA_mimic_put. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF102816. dsDNA_mimic_put. 1 hit.
ProtoNet	Search...

Entry information

Entry name

YCIU_ECOLI

Accession

Primary (citable) accession number: P0A8L7
Secondary accession number(s): P76028, P76830, Q8XCC8

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 7, 2005
Last sequence update:	June 7, 2005
Last modified:	January 25, 2012
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program