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Protein

UPF0263 protein YciU

Gene

yciU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6633-MONOMER.
ECOL316407:JW1240-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0263 protein YciU
Gene namesi
Name:yciU
Ordered Locus Names:b1248, JW1240
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14256. yciU.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 109109UPF0263 protein YciUPRO_0000072775Add
BLAST

Proteomic databases

PaxDbiP0A8L7.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
aceEP0AFG82EBI-544511,EBI-542683

Protein-protein interaction databases

BioGridi4261977. 21 interactions.
DIPiDIP-47882N.
IntActiP0A8L7. 6 interactions.
STRINGi511145.b1248.

Structurei

3D structure databases

ProteinModelPortaliP0A8L7.
SMRiP0A8L7. Positions 8-109.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0263 family.Curated

Phylogenomic databases

eggNOGiENOG4108W5H. Bacteria.
COG3099. LUCA.
HOGENOMiHOG000277311.
KOiK09901.
OMAiQFEDRGA.
OrthoDBiEOG6R2H2M.

Family and domain databases

Gene3Di3.10.450.140. 1 hit.
HAMAPiMF_00680. UPF0263.
InterProiIPR007376. dsDNA_mimic_put.
[Graphical view]
PfamiPF04269. DUF440. 1 hit.
[Graphical view]
PIRSFiPIRSF004916. UCP004916. 1 hit.
ProDomiPD020447. dsDNA_mimic_put. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF102816. SSF102816. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8L7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDMDLNNRLT EDETLEQAYD IFLELAADNL DPADVLLFNL QFEERGGAEL
60 70 80 90 100
FDPAEDWQEH VDFDLNPDFF AEVVIGLADS EDGEINDVFA RILLCREKDH

KLCHIIWRE
Length:109
Mass (Da):12,687
Last modified:June 7, 2005 - v1
Checksum:i60DC364A35954FB7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74330.2.
AP009048 Genomic DNA. Translation: BAA14780.1.
PIRiC64872.
RefSeqiNP_415764.4. NC_000913.3.
WP_000366959.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74330; AAC74330; b1248.
BAA14780; BAA14780; BAA14780.
GeneIDi945819.
KEGGiecj:JW1240.
eco:b1248.
PATRICi32117756. VBIEscCol129921_1298.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74330.2.
AP009048 Genomic DNA. Translation: BAA14780.1.
PIRiC64872.
RefSeqiNP_415764.4. NC_000913.3.
WP_000366959.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A8L7.
SMRiP0A8L7. Positions 8-109.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261977. 21 interactions.
DIPiDIP-47882N.
IntActiP0A8L7. 6 interactions.
STRINGi511145.b1248.

Proteomic databases

PaxDbiP0A8L7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74330; AAC74330; b1248.
BAA14780; BAA14780; BAA14780.
GeneIDi945819.
KEGGiecj:JW1240.
eco:b1248.
PATRICi32117756. VBIEscCol129921_1298.

Organism-specific databases

EchoBASEiEB4004.
EcoGeneiEG14256. yciU.

Phylogenomic databases

eggNOGiENOG4108W5H. Bacteria.
COG3099. LUCA.
HOGENOMiHOG000277311.
KOiK09901.
OMAiQFEDRGA.
OrthoDBiEOG6R2H2M.

Enzyme and pathway databases

BioCyciEcoCyc:G6633-MONOMER.
ECOL316407:JW1240-MONOMER.

Miscellaneous databases

PROiP0A8L7.

Family and domain databases

Gene3Di3.10.450.140. 1 hit.
HAMAPiMF_00680. UPF0263.
InterProiIPR007376. dsDNA_mimic_put.
[Graphical view]
PfamiPF04269. DUF440. 1 hit.
[Graphical view]
PIRSFiPIRSF004916. UCP004916. 1 hit.
ProDomiPD020447. dsDNA_mimic_put. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF102816. SSF102816. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYCIU_ECOLI
AccessioniPrimary (citable) accession number: P0A8L7
Secondary accession number(s): P76028, P76830, Q8XCC8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: January 20, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.