Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0260 protein YcgN

Gene

ycgN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6618-MONOMER.
ECOL316407:JW5180-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0260 protein YcgN
Gene namesi
Name:ycgN
Ordered Locus Names:b1181, JW5180
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13895. ycgN.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 153153UPF0260 protein YcgNPRO_0000214579Add
BLAST

Proteomic databases

PaxDbiP0A8L5.

Interactioni

Protein-protein interaction databases

BioGridi4262873. 9 interactions.
STRINGi511145.b1181.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0260 family.Curated

Phylogenomic databases

eggNOGiENOG4108ZZ3. Bacteria.
COG2983. LUCA.
HOGENOMiHOG000276681.
InParanoidiP0A8L5.
KOiK09160.
OMAiTCQCSDY.
PhylomeDBiP0A8L5.

Family and domain databases

HAMAPiMF_00676. UPF0260. 1 hit.
InterProiIPR005358. Puta_zinc/iron-chelating_dom.
IPR008228. UCP006173.
[Graphical view]
PfamiPF03692. CxxCxxCC. 1 hit.
[Graphical view]
PIRSFiPIRSF006173. UCP006173. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8L5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEHLMSDVP FWQSKTLDEM SDAEWESLCD GCGQCCLHKL MDEDTDEIYF
60 70 80 90 100
TNVACRQLNI KTCQCRNYER RFEFEPDCIK LTRENLPTFE WLPMTCAYRL
110 120 130 140 150
LAEGKDLPAW HPLLTGSKAA MHGERISVRH IAVKESEVID WQDHILNKPD

WAQ
Length:153
Mass (Da):17,910
Last modified:June 7, 2005 - v1
Checksum:iCDF6152C8D4898C2
GO

Sequence cautioni

The sequence BAA36015 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74265.3.
AP009048 Genomic DNA. Translation: BAA36015.2. Different initiation.
RefSeqiNP_415699.5. NC_000913.3.
WP_000807626.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74265; AAC74265; b1181.
BAA36015; BAA36015; BAA36015.
GeneIDi945804.
KEGGiecj:JW5180.
eco:b1181.
PATRICi32117608. VBIEscCol129921_1226.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74265.3.
AP009048 Genomic DNA. Translation: BAA36015.2. Different initiation.
RefSeqiNP_415699.5. NC_000913.3.
WP_000807626.1. NZ_LN832404.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262873. 9 interactions.
STRINGi511145.b1181.

Proteomic databases

PaxDbiP0A8L5.

Protocols and materials databases

DNASUi945804.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74265; AAC74265; b1181.
BAA36015; BAA36015; BAA36015.
GeneIDi945804.
KEGGiecj:JW5180.
eco:b1181.
PATRICi32117608. VBIEscCol129921_1226.

Organism-specific databases

EchoBASEiEB3654.
EcoGeneiEG13895. ycgN.

Phylogenomic databases

eggNOGiENOG4108ZZ3. Bacteria.
COG2983. LUCA.
HOGENOMiHOG000276681.
InParanoidiP0A8L5.
KOiK09160.
OMAiTCQCSDY.
PhylomeDBiP0A8L5.

Enzyme and pathway databases

BioCyciEcoCyc:G6618-MONOMER.
ECOL316407:JW5180-MONOMER.

Miscellaneous databases

PROiP0A8L5.

Family and domain databases

HAMAPiMF_00676. UPF0260. 1 hit.
InterProiIPR005358. Puta_zinc/iron-chelating_dom.
IPR008228. UCP006173.
[Graphical view]
PfamiPF03692. CxxCxxCC. 1 hit.
[Graphical view]
PIRSFiPIRSF006173. UCP006173. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCGN_ECOLI
AccessioniPrimary (citable) accession number: P0A8L5
Secondary accession number(s): P76005, Q9R3F1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: September 7, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.