Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0250 protein YbeD

Gene

ybeD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11592-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0250 protein YbeD
Gene namesi
Name:ybeD
Ordered Locus Names:b0631, JW0626
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11592 ybeD

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002092961 – 87UPF0250 protein YbeDAdd BLAST87

Proteomic databases

EPDiP0A8J4
PaxDbiP0A8J4
PRIDEiP0A8J4

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
tufAP0CE473EBI-370708,EBI-301077

Protein-protein interaction databases

BioGridi4260679, 235 interactors
DIPiDIP-31839N
IntActiP0A8J4, 10 interactors
STRINGi316385.ECDH10B_0700

Structurei

Secondary structure

187
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Beta strandi15 – 22Combined sources8
Helixi27 – 38Combined sources12
Beta strandi39 – 41Combined sources3
Beta strandi45 – 48Combined sources4
Beta strandi53 – 62Combined sources10
Helixi67 – 77Combined sources11
Beta strandi80 – 82Combined sources3
Beta strandi84 – 86Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1RWUNMR-A1-87[»]
ProteinModelPortaliP0A8J4
SMRiP0A8J4
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A8J4

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0250 family.Curated

Phylogenomic databases

eggNOGiENOG4108Z43 Bacteria
COG2921 LUCA
HOGENOMiHOG000265101
InParanoidiP0A8J4
KOiK09158
OMAiMNTKFDE
PhylomeDBiP0A8J4

Family and domain databases

HAMAPiMF_00659 UPF0250, 1 hit
InterProiView protein in InterPro
IPR007454 UPF0250
IPR027471 YbeD-like_sf
PANTHERiPTHR38036 PTHR38036, 1 hit
PfamiView protein in Pfam
PF04359 DUF493, 1 hit
SUPFAMiSSF117991 SSF117991, 1 hit

Sequencei

Sequence statusi: Complete.

P0A8J4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTKLNELLE FPTPFTYKVM GQALPELVDQ VVEVVQRHAP GDYTPTVKPS
60 70 80
SKGNYHSVSI TINATHIEQV ETLYEELGKI DIVRMVL
Length:87
Mass (Da):9,827
Last modified:June 7, 2005 - v1
Checksum:i13B14D3B2A6E1F95
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L07636 Genomic DNA Translation: AAA66341.1
U82598 Genomic DNA Translation: AAB40831.1
U00096 Genomic DNA Translation: AAC73732.1
AP009048 Genomic DNA Translation: BAA35274.1
PIRiE64797
RefSeqiNP_415164.1, NC_000913.3
WP_000850550.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73732; AAC73732; b0631
BAA35274; BAA35274; BAA35274
GeneIDi945220
KEGGiecj:JW0626
eco:b0631
PATRICifig|511145.12.peg.661

Similar proteinsi

Entry informationi

Entry nameiYBED_ECOLI
AccessioniPrimary (citable) accession number: P0A8J4
Secondary accession number(s): P30977
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: March 28, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health