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Protein

UPF0208 membrane protein YfbV

Gene

yfbV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • negative regulation of chromosome organization Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7189-MONOMER.
ECOL316407:JW2292-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0208 membrane protein YfbV
Gene namesi
Name:yfbV
Ordered Locus Names:b2295, JW2292
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14106. yfbV.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 4545CytoplasmicSequence analysisAdd
BLAST
Transmembranei46 – 6520HelicalSequence analysisAdd
BLAST
Topological domaini66 – 683PeriplasmicSequence analysis
Transmembranei69 – 9123HelicalSequence analysisAdd
BLAST
Topological domaini92 – 15160CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 151151UPF0208 membrane protein YfbVPRO_0000080809Add
BLAST

Proteomic databases

PaxDbiP0A8D9.

Interactioni

Protein-protein interaction databases

BioGridi4262965. 422 interactions.
IntActiP0A8D9. 1 interaction.
STRINGi511145.b2295.

Structurei

3D structure databases

ProteinModelPortaliP0A8D9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0208 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105PQ6. Bacteria.
COG3092. LUCA.
HOGENOMiHOG000272576.
KOiK09899.
OMAiWPVRKEL.
OrthoDBiEOG6KQ6FX.

Family and domain databases

HAMAPiMF_01101. UPF0208.
InterProiIPR007334. UPF0208.
[Graphical view]
PfamiPF04217. DUF412. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A8D9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTPDNRSVN FFSLFRRGQH YSKTWPLEKR LAPVFVENRV IKMTRYAIRF
60 70 80 90 100
MPPIAVFTLC WQIALGGQLG PAVATALFAL SLPMQGLWWL GKRSVTPLPP
110 120 130 140 150
AILNWFYEVR GKLQESGQVL APVEGKPDYQ ALADTLKRAF KQLDKTFLDD

L
Length:151
Mass (Da):17,213
Last modified:June 7, 2005 - v1
Checksum:i3818D038EBF60354
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75355.1.
AP009048 Genomic DNA. Translation: BAA16130.1.
PIRiE65001.
RefSeqiNP_416798.1. NC_000913.3.
WP_000106627.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75355; AAC75355; b2295.
BAA16130; BAA16130; BAA16130.
GeneIDi946774.
KEGGiecj:JW2292.
eco:b2295.
PATRICi32119959. VBIEscCol129921_2389.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75355.1.
AP009048 Genomic DNA. Translation: BAA16130.1.
PIRiE65001.
RefSeqiNP_416798.1. NC_000913.3.
WP_000106627.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A8D9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262965. 422 interactions.
IntActiP0A8D9. 1 interaction.
STRINGi511145.b2295.

Proteomic databases

PaxDbiP0A8D9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75355; AAC75355; b2295.
BAA16130; BAA16130; BAA16130.
GeneIDi946774.
KEGGiecj:JW2292.
eco:b2295.
PATRICi32119959. VBIEscCol129921_2389.

Organism-specific databases

EchoBASEiEB3859.
EcoGeneiEG14106. yfbV.

Phylogenomic databases

eggNOGiENOG4105PQ6. Bacteria.
COG3092. LUCA.
HOGENOMiHOG000272576.
KOiK09899.
OMAiWPVRKEL.
OrthoDBiEOG6KQ6FX.

Enzyme and pathway databases

BioCyciEcoCyc:G7189-MONOMER.
ECOL316407:JW2292-MONOMER.

Miscellaneous databases

PROiP0A8D9.

Family and domain databases

HAMAPiMF_01101. UPF0208.
InterProiIPR007334. UPF0208.
[Graphical view]
PfamiPF04217. DUF412. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYFBV_ECOLI
AccessioniPrimary (citable) accession number: P0A8D9
Secondary accession number(s): P77496, Q8X2P6, Q8X4G9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: July 6, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.