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P0A8C4 (YGFB_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
UPF0149 protein YgfB
Gene names
Name:ygfB
Ordered Locus Names:b2909, JW5473
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length192 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the UPF0149 family.

Sequence caution

The sequence AAA69077.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

The sequence BAA14324.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 192192UPF0149 protein YgfB HAMAP-Rule MF_00346
PRO_0000207558

Sequences

Sequence LengthMass (Da)Tools
P0A8C4 [UniParc].

Last modified June 7, 2005. Version 1.
Checksum: D60ADE6A901FB7D7

FASTA19221,230
        10         20         30         40         50         60 
MSIQNEMPGY NEMNQYLNQQ GTGLTPAEMH GLISGMICGG NDDSSWLPLL HDLTNEGMAF 

        70         80         90        100        110        120 
GHELAQALRK MHSATSDALQ DDGFLFQLYL PDGDDVSVFD RADALAGWVN HFLLGLGVTQ 

       130        140        150        160        170        180 
PKLDKVTGET GEAIDDLRNI AQLGYDEDED QEELEMSLEE IIEYVRVAAL LCHDTFTHPQ 

       190 
PTAPEVQKPT LH 

« Hide

References

« Hide 'large scale' references
[1]"Isolation and characterization of a light-sensitive mutant of Escherichia coli K-12 with a mutation in a gene that is required for the biosynthesis of ubiquinone."
Nakahigashi K., Miyamoto K., Nishimura K., Inokuchi H.
J. Bacteriol. 174:7352-7359(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 33694 / HB101.
[2]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[3]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D90281 Genomic DNA. Translation: BAA14324.1. Different initiation.
U28377 Genomic DNA. Translation: AAA69077.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75947.2.
AP009048 Genomic DNA. Translation: BAE76974.1.
PIRA47020.
RefSeqNP_417385.4. NC_000913.3.
YP_491110.1. NC_007779.1.

3D structure databases

ProteinModelPortalP0A8C4.
SMRP0A8C4. Positions 10-176.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-48191N.
IntActP0A8C4. 7 interactions.
STRING511145.b2909.

PTM databases

PhosSiteP0810454.

Proteomic databases

PaxDbP0A8C4.
PRIDEP0A8C4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC75947; AAC75947; b2909.
BAE76974; BAE76974; BAE76974.
GeneID12930243.
947400.
KEGGecj:Y75_p2841.
eco:b2909.
PATRIC32121232. VBIEscCol129921_3004.

Organism-specific databases

EchoBASEEB1299.
EcoGeneEG11323. ygfB.

Phylogenomic databases

eggNOGCOG3079.
HOGENOMHOG000276031.
KOK09895.
OMAELMNDGQ.
OrthoDBEOG6358FQ.
ProtClustDBPRK01736.

Enzyme and pathway databases

BioCycEcoCyc:EG11323-MONOMER.
ECOL316407:JW5473-MONOMER.

Gene expression databases

GenevestigatorP0A8C4.

Family and domain databases

HAMAPMF_00346. UPF0149.
InterProIPR011978. UPF0149.
[Graphical view]
PfamPF03695. UPF0149. 1 hit.
[Graphical view]
SUPFAMSSF101327. SSF101327. 1 hit.
TIGRFAMsTIGR02292. ygfB_yecA. 1 hit.
ProtoNetSearch...

Other

PROP0A8C4.

Entry information

Entry nameYGFB_ECOLI
AccessionPrimary (citable) accession number: P0A8C4
Secondary accession number(s): P25533, Q2M9T2, Q8XD28
Entry history
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: April 16, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene