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P0A8C4

- YGFB_ECOLI

UniProt

P0A8C4 - YGFB_ECOLI

Protein

UPF0149 protein YgfB

Gene

ygfB

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (07 Jun 2005)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciEcoCyc:EG11323-MONOMER.
    ECOL316407:JW5473-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0149 protein YgfB
    Gene namesi
    Name:ygfB
    Ordered Locus Names:b2909, JW5473
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG11323. ygfB.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 192192UPF0149 protein YgfBPRO_0000207558Add
    BLAST

    Proteomic databases

    PaxDbiP0A8C4.
    PRIDEiP0A8C4.

    PTM databases

    PhosSiteiP0810454.

    Expressioni

    Gene expression databases

    GenevestigatoriP0A8C4.

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-48191N.
    IntActiP0A8C4. 7 interactions.
    STRINGi511145.b2909.

    Structurei

    3D structure databases

    ProteinModelPortaliP0A8C4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the UPF0149 family.Curated

    Phylogenomic databases

    eggNOGiCOG3079.
    HOGENOMiHOG000276031.
    KOiK09895.
    OMAiELMNDGQ.
    OrthoDBiEOG6358FQ.

    Family and domain databases

    HAMAPiMF_00346. UPF0149.
    InterProiIPR011978. UPF0149.
    [Graphical view]
    PfamiPF03695. UPF0149. 1 hit.
    [Graphical view]
    SUPFAMiSSF101327. SSF101327. 1 hit.
    TIGRFAMsiTIGR02292. ygfB_yecA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P0A8C4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSIQNEMPGY NEMNQYLNQQ GTGLTPAEMH GLISGMICGG NDDSSWLPLL    50
    HDLTNEGMAF GHELAQALRK MHSATSDALQ DDGFLFQLYL PDGDDVSVFD 100
    RADALAGWVN HFLLGLGVTQ PKLDKVTGET GEAIDDLRNI AQLGYDEDED 150
    QEELEMSLEE IIEYVRVAAL LCHDTFTHPQ PTAPEVQKPT LH 192
    Length:192
    Mass (Da):21,230
    Last modified:June 7, 2005 - v1
    Checksum:iD60ADE6A901FB7D7
    GO

    Sequence cautioni

    The sequence AAA69077.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.
    The sequence BAA14324.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D90281 Genomic DNA. Translation: BAA14324.1. Different initiation.
    U28377 Genomic DNA. Translation: AAA69077.1. Different initiation.
    U00096 Genomic DNA. Translation: AAC75947.2.
    AP009048 Genomic DNA. Translation: BAE76974.1.
    PIRiA47020.
    RefSeqiNP_417385.4. NC_000913.3.
    YP_491110.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC75947; AAC75947; b2909.
    BAE76974; BAE76974; BAE76974.
    GeneIDi12930243.
    947400.
    KEGGiecj:Y75_p2841.
    eco:b2909.
    PATRICi32121232. VBIEscCol129921_3004.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D90281 Genomic DNA. Translation: BAA14324.1 . Different initiation.
    U28377 Genomic DNA. Translation: AAA69077.1 . Different initiation.
    U00096 Genomic DNA. Translation: AAC75947.2 .
    AP009048 Genomic DNA. Translation: BAE76974.1 .
    PIRi A47020.
    RefSeqi NP_417385.4. NC_000913.3.
    YP_491110.1. NC_007779.1.

    3D structure databases

    ProteinModelPortali P0A8C4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-48191N.
    IntActi P0A8C4. 7 interactions.
    STRINGi 511145.b2909.

    PTM databases

    PhosSitei P0810454.

    Proteomic databases

    PaxDbi P0A8C4.
    PRIDEi P0A8C4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC75947 ; AAC75947 ; b2909 .
    BAE76974 ; BAE76974 ; BAE76974 .
    GeneIDi 12930243.
    947400.
    KEGGi ecj:Y75_p2841.
    eco:b2909.
    PATRICi 32121232. VBIEscCol129921_3004.

    Organism-specific databases

    EchoBASEi EB1299.
    EcoGenei EG11323. ygfB.

    Phylogenomic databases

    eggNOGi COG3079.
    HOGENOMi HOG000276031.
    KOi K09895.
    OMAi ELMNDGQ.
    OrthoDBi EOG6358FQ.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG11323-MONOMER.
    ECOL316407:JW5473-MONOMER.

    Miscellaneous databases

    PROi P0A8C4.

    Gene expression databases

    Genevestigatori P0A8C4.

    Family and domain databases

    HAMAPi MF_00346. UPF0149.
    InterProi IPR011978. UPF0149.
    [Graphical view ]
    Pfami PF03695. UPF0149. 1 hit.
    [Graphical view ]
    SUPFAMi SSF101327. SSF101327. 1 hit.
    TIGRFAMsi TIGR02292. ygfB_yecA. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Isolation and characterization of a light-sensitive mutant of Escherichia coli K-12 with a mutation in a gene that is required for the biosynthesis of ubiquinone."
      Nakahigashi K., Miyamoto K., Nishimura K., Inokuchi H.
      J. Bacteriol. 174:7352-7359(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 33694 / HB101.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

    Entry informationi

    Entry nameiYGFB_ECOLI
    AccessioniPrimary (citable) accession number: P0A8C4
    Secondary accession number(s): P25533, Q2M9T2, Q8XD28
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 7, 2005
    Last sequence update: June 7, 2005
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. SIMILARITY comments
      Index of protein domains and families
    3. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries

    External Data

    Dasty 3