Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0149 protein YgfB

Gene

ygfB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11323-MONOMER.
ECOL316407:JW5473-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0149 protein YgfB
Gene namesi
Name:ygfB
Ordered Locus Names:b2909, JW5473
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11323. ygfB.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 192192UPF0149 protein YgfBPRO_0000207558Add
BLAST

Proteomic databases

PaxDbiP0A8C4.
PRIDEiP0A8C4.

Interactioni

Protein-protein interaction databases

DIPiDIP-48191N.
IntActiP0A8C4. 7 interactions.
STRINGi511145.b2909.

Structurei

3D structure databases

ProteinModelPortaliP0A8C4.
SMRiP0A8C4. Positions 10-176.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0149 family.Curated

Phylogenomic databases

eggNOGiCOG3079.
HOGENOMiHOG000276031.
InParanoidiP0A8C4.
KOiK09895.
OMAiELMNDGQ.
OrthoDBiEOG6358FQ.

Family and domain databases

HAMAPiMF_00346. UPF0149.
InterProiIPR011978. UPF0149.
[Graphical view]
PfamiPF03695. UPF0149. 1 hit.
[Graphical view]
SUPFAMiSSF101327. SSF101327. 1 hit.
TIGRFAMsiTIGR02292. ygfB_yecA. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8C4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIQNEMPGY NEMNQYLNQQ GTGLTPAEMH GLISGMICGG NDDSSWLPLL
60 70 80 90 100
HDLTNEGMAF GHELAQALRK MHSATSDALQ DDGFLFQLYL PDGDDVSVFD
110 120 130 140 150
RADALAGWVN HFLLGLGVTQ PKLDKVTGET GEAIDDLRNI AQLGYDEDED
160 170 180 190
QEELEMSLEE IIEYVRVAAL LCHDTFTHPQ PTAPEVQKPT LH
Length:192
Mass (Da):21,230
Last modified:June 7, 2005 - v1
Checksum:iD60ADE6A901FB7D7
GO

Sequence cautioni

The sequence AAA69077.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence BAA14324.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D90281 Genomic DNA. Translation: BAA14324.1. Different initiation.
U28377 Genomic DNA. Translation: AAA69077.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75947.2.
AP009048 Genomic DNA. Translation: BAE76974.1.
PIRiA47020.
RefSeqiNP_417385.4. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC75947; AAC75947; b2909.
BAE76974; BAE76974; BAE76974.
GeneIDi947400.
KEGGiecj:Y75_p2841.
eco:b2909.
PATRICi32121232. VBIEscCol129921_3004.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D90281 Genomic DNA. Translation: BAA14324.1. Different initiation.
U28377 Genomic DNA. Translation: AAA69077.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75947.2.
AP009048 Genomic DNA. Translation: BAE76974.1.
PIRiA47020.
RefSeqiNP_417385.4. NC_000913.3.

3D structure databases

ProteinModelPortaliP0A8C4.
SMRiP0A8C4. Positions 10-176.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-48191N.
IntActiP0A8C4. 7 interactions.
STRINGi511145.b2909.

Proteomic databases

PaxDbiP0A8C4.
PRIDEiP0A8C4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75947; AAC75947; b2909.
BAE76974; BAE76974; BAE76974.
GeneIDi947400.
KEGGiecj:Y75_p2841.
eco:b2909.
PATRICi32121232. VBIEscCol129921_3004.

Organism-specific databases

EchoBASEiEB1299.
EcoGeneiEG11323. ygfB.

Phylogenomic databases

eggNOGiCOG3079.
HOGENOMiHOG000276031.
InParanoidiP0A8C4.
KOiK09895.
OMAiELMNDGQ.
OrthoDBiEOG6358FQ.

Enzyme and pathway databases

BioCyciEcoCyc:EG11323-MONOMER.
ECOL316407:JW5473-MONOMER.

Miscellaneous databases

PROiP0A8C4.

Family and domain databases

HAMAPiMF_00346. UPF0149.
InterProiIPR011978. UPF0149.
[Graphical view]
PfamiPF03695. UPF0149. 1 hit.
[Graphical view]
SUPFAMiSSF101327. SSF101327. 1 hit.
TIGRFAMsiTIGR02292. ygfB_yecA. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Isolation and characterization of a light-sensitive mutant of Escherichia coli K-12 with a mutation in a gene that is required for the biosynthesis of ubiquinone."
    Nakahigashi K., Miyamoto K., Nishimura K., Inokuchi H.
    J. Bacteriol. 174:7352-7359(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 33694 / HB101.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYGFB_ECOLI
AccessioniPrimary (citable) accession number: P0A8C4
Secondary accession number(s): P25533, Q2M9T2, Q8XD28
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: June 24, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.