Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ribosome maturation factor RimP

Gene

rimP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Required for maturation of 30S ribosomal subunits, probably at a late stage of ribosomal protein binding, while Era is associated and after RimM.2 Publications

GO - Biological processi

  • ribosomal small subunit assembly Source: EcoCyc
  • ribosomal small subunit biogenesis Source: EcoliWiki
  • translation Source: EcoliWiki
Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciEcoCyc:EG11179-MONOMER.
ECOL316407:JW5533-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation factor RimP
Gene namesi
Name:rimP
Synonyms:yhbC
Ordered Locus Names:b3170, JW5533
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11179. rimP.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Disruption phenotypei

Cells lacking this gene show a reduced growth rate, especially at high temperatures. They show a reduced amount of 70S ribosomes engaged in translation and a corresponding increase in the amount of free ribosomal subunits.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 150150Ribosome maturation factor RimPPRO_0000181869Add
BLAST

Proteomic databases

PaxDbiP0A8A8.

Interactioni

Subunit structurei

Associates with free 30S subunits, but not with free 50S subunits or with mature ribosomes.

Binary interactionsi

WithEntry#Exp.IntActNotes
rpsLP0A7S33EBI-561065,EBI-543960

Protein-protein interaction databases

BioGridi4260791. 16 interactions.
DIPiDIP-47892N.
IntActiP0A8A8. 7 interactions.
MINTiMINT-1219023.
STRINGi511145.b3170.

Structurei

3D structure databases

ProteinModelPortaliP0A8A8.
SMRiP0A8A8. Positions 7-127.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RimP family.Curated

Phylogenomic databases

eggNOGiENOG4105K7D. Bacteria.
COG0779. LUCA.
HOGENOMiHOG000242360.
InParanoidiP0A8A8.
KOiK09748.
PhylomeDBiP0A8A8.

Family and domain databases

Gene3Di2.30.30.180. 1 hit.
3.30.300.70. 1 hit.
HAMAPiMF_01077. RimP. 1 hit.
InterProiIPR003728. Ribosome_maturation_RimP.
IPR028998. RimP_C.
IPR028989. RimP_N.
[Graphical view]
PfamiPF02576. DUF150. 1 hit.
[Graphical view]
SUPFAMiSSF74942. SSF74942. 1 hit.
SSF75420. SSF75420. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8A8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTLEQKLTE MITAPVEALG FELVGIEFIR GRTSTLRIYI DSEDGINVDD
60 70 80 90 100
CADVSHQVSA VLDVEDPITV AYNLEVSSPG LDRPLFTAEH YARFVGEEVT
110 120 130 140 150
LVLRMAVQNR RKWQGVIKAV DGEMITVTVE GKDEVFALSN IQKANLVPHF
Length:150
Mass (Da):16,651
Last modified:November 24, 2009 - v2
Checksum:iFFEC71975B4492AB
GO

Sequence cautioni

The sequence AAA57973 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence CAA25199 differs from that shown. Reason: Frameshift at position 7. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti9 – 91T → A in CAA25199 (PubMed:6326058).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X00513 Genomic DNA. Translation: CAA25199.1. Frameshift.
U18997 Genomic DNA. Translation: AAA57973.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76204.4.
AP009048 Genomic DNA. Translation: BAE77216.1.
PIRiF65107. WMECN5.
RefSeqiNP_417639.6. NC_000913.3.
WP_001300397.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76204; AAC76204; b3170.
BAE77216; BAE77216; BAE77216.
GeneIDi947680.
KEGGiecj:JW5533.
eco:b3170.
PATRICi32121758. VBIEscCol129921_3265.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X00513 Genomic DNA. Translation: CAA25199.1. Frameshift.
U18997 Genomic DNA. Translation: AAA57973.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76204.4.
AP009048 Genomic DNA. Translation: BAE77216.1.
PIRiF65107. WMECN5.
RefSeqiNP_417639.6. NC_000913.3.
WP_001300397.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0A8A8.
SMRiP0A8A8. Positions 7-127.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260791. 16 interactions.
DIPiDIP-47892N.
IntActiP0A8A8. 7 interactions.
MINTiMINT-1219023.
STRINGi511145.b3170.

Proteomic databases

PaxDbiP0A8A8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76204; AAC76204; b3170.
BAE77216; BAE77216; BAE77216.
GeneIDi947680.
KEGGiecj:JW5533.
eco:b3170.
PATRICi32121758. VBIEscCol129921_3265.

Organism-specific databases

EchoBASEiEB1166.
EcoGeneiEG11179. rimP.

Phylogenomic databases

eggNOGiENOG4105K7D. Bacteria.
COG0779. LUCA.
HOGENOMiHOG000242360.
InParanoidiP0A8A8.
KOiK09748.
PhylomeDBiP0A8A8.

Enzyme and pathway databases

BioCyciEcoCyc:EG11179-MONOMER.
ECOL316407:JW5533-MONOMER.

Miscellaneous databases

PROiP0A8A8.

Family and domain databases

Gene3Di2.30.30.180. 1 hit.
3.30.300.70. 1 hit.
HAMAPiMF_01077. RimP. 1 hit.
InterProiIPR003728. Ribosome_maturation_RimP.
IPR028998. RimP_C.
IPR028989. RimP_N.
[Graphical view]
PfamiPF02576. DUF150. 1 hit.
[Graphical view]
SUPFAMiSSF74942. SSF74942. 1 hit.
SSF75420. SSF75420. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRIMP_ECOLI
AccessioniPrimary (citable) accession number: P0A8A8
Secondary accession number(s): P03843, Q2M940, Q8X9M1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: November 24, 2009
Last modified: September 7, 2016
This is version 89 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.