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Protein

Probable transcriptional regulatory protein YebC

Gene

yebC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • response to ionizing radiation Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG11137-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Probable transcriptional regulatory protein YebCUniRule annotation
Gene namesi
Name:yebCUniRule annotation
Ordered Locus Names:b1864, JW1853
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi

Organism-specific databases

EcoGeneiEG11137 yebC

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

  • cytosol Source: EcoCyc

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001757991 – 246Probable transcriptional regulatory protein YebCAdd BLAST246

Proteomic databases

PaxDbiP0A8A0
PRIDEiP0A8A0

Interactioni

Protein-protein interaction databases

BioGridi4261689, 103 interactors
DIPiDIP-47886N
IntActiP0A8A0, 22 interactors
STRINGi316385.ECDH10B_2005

Structurei

Secondary structure

1246
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi7 – 9Combined sources3
Beta strandi11 – 13Combined sources3
Turni14 – 18Combined sources5
Helixi21 – 37Combined sources17
Helixi50 – 58Combined sources9
Helixi63 – 70Combined sources8
Beta strandi83 – 91Combined sources9
Turni92 – 94Combined sources3
Beta strandi95 – 104Combined sources10
Helixi106 – 118Combined sources13
Turni119 – 121Combined sources3
Helixi131 – 133Combined sources3
Beta strandi134 – 145Combined sources12
Helixi147 – 157Combined sources11
Beta strandi160 – 164Combined sources5
Beta strandi170 – 175Combined sources6
Helixi176 – 178Combined sources3
Helixi179 – 188Combined sources10
Beta strandi194 – 204Combined sources11
Turni210 – 212Combined sources3
Helixi214 – 225Combined sources12
Beta strandi226 – 234Combined sources9
Helixi240 – 243Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KONX-ray2.20A1-246[»]
ProteinModelPortaliP0A8A0
SMRiP0A8A0
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A8A0

Family & Domainsi

Sequence similaritiesi

Belongs to the TACO1 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CDY Bacteria
COG0217 LUCA
HOGENOMiHOG000228370
InParanoidiP0A8A0
OMAiKWSTIKH
PhylomeDBiP0A8A0

Family and domain databases

Gene3Di1.10.10.200, 1 hit
3.30.70.980, 3 hits
HAMAPiMF_00693 Transcrip_reg_TACO1, 1 hit
InterProiView protein in InterPro
IPR017856 Integrase-like_N
IPR002876 Transcrip_reg_TACO1-like
IPR026564 Transcrip_reg_TACO1-like_dom3
IPR029072 YebC-like
PANTHERiPTHR12532 PTHR12532, 1 hit
PfamiView protein in Pfam
PF01709 Transcrip_reg, 1 hit
SUPFAMiSSF75625 SSF75625, 1 hit
TIGRFAMsiTIGR01033 TIGR01033, 1 hit

Sequencei

Sequence statusi: Complete.

P0A8A0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGHSKWANT RHRKAAQDAK RGKIFTKIIR ELVTAAKLGG GDPDANPRLR
60 70 80 90 100
AAVDKALSNN MTRDTLNRAI ARGVGGDDDA NMETIIYEGY GPGGTAIMIE
110 120 130 140 150
CLSDNRNRTV AEVRHAFSKC GGNLGTDGSV AYLFSKKGVI SFEKGDEDTI
160 170 180 190 200
MEAALEAGAE DVVTYDDGAI DVYTAWEEMG KVRDALEAAG LKADSAEVSM
210 220 230 240
IPSTKADMDA ETAPKLMRLI DMLEDCDDVQ EVYHNGEISD EVAATL
Length:246
Mass (Da):26,423
Last modified:June 7, 2005 - v1
Checksum:iF02F71E7DAF39C18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10165 Genomic DNA Translation: BAA01031.1
X59551 Genomic DNA Translation: CAA42126.1
U00096 Genomic DNA Translation: AAC74934.1
AP009048 Genomic DNA Translation: BAA15675.1
PIRiC38113
RefSeqiNP_416378.1, NC_000913.3
WP_000907248.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74934; AAC74934; b1864
BAA15675; BAA15675; BAA15675
GeneIDi946379
KEGGiecj:JW1853
eco:b1864
PATRICifig|511145.12.peg.1943

Entry informationi

Entry nameiYEBC_ECOLI
AccessioniPrimary (citable) accession number: P0A8A0
Secondary accession number(s): P24237
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: March 28, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

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