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Protein

Probable transcriptional regulatory protein YebC

Gene

yebC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: UniProtKB-HAMAP
  • response to ionizing radiation Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG11137-MONOMER.
ECOL316407:JW1853-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable transcriptional regulatory protein YebCUniRule annotation
Gene namesi
Name:yebCUniRule annotation
Ordered Locus Names:b1864, JW1853
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11137. yebC.

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001757991 – 246Probable transcriptional regulatory protein YebCAdd BLAST246

Proteomic databases

PaxDbiP0A8A0.
PRIDEiP0A8A0.

Interactioni

Protein-protein interaction databases

BioGridi4261689. 74 interactors.
DIPiDIP-47886N.
IntActiP0A8A0. 22 interactors.
MINTiMINT-1241216.
STRINGi511145.b1864.

Structurei

Secondary structure

1246
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi7 – 9Combined sources3
Beta strandi11 – 13Combined sources3
Turni14 – 18Combined sources5
Helixi21 – 37Combined sources17
Helixi50 – 58Combined sources9
Helixi63 – 70Combined sources8
Beta strandi83 – 91Combined sources9
Turni92 – 94Combined sources3
Beta strandi95 – 104Combined sources10
Helixi106 – 118Combined sources13
Turni119 – 121Combined sources3
Helixi131 – 133Combined sources3
Beta strandi134 – 145Combined sources12
Helixi147 – 157Combined sources11
Beta strandi160 – 164Combined sources5
Beta strandi170 – 175Combined sources6
Helixi176 – 178Combined sources3
Helixi179 – 188Combined sources10
Beta strandi194 – 204Combined sources11
Turni210 – 212Combined sources3
Helixi214 – 225Combined sources12
Beta strandi226 – 234Combined sources9
Helixi240 – 243Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KONX-ray2.20A1-246[»]
ProteinModelPortaliP0A8A0.
SMRiP0A8A0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A8A0.

Family & Domainsi

Sequence similaritiesi

Belongs to the TACO1 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CDY. Bacteria.
COG0217. LUCA.
HOGENOMiHOG000228370.
InParanoidiP0A8A0.
OMAiMTRNGGS.
PhylomeDBiP0A8A0.

Family and domain databases

Gene3Di1.10.10.200. 1 hit.
3.30.1270.10. 2 hits.
3.30.70.980. 1 hit.
HAMAPiMF_00693. Transcrip_reg_TACO1. 1 hit.
InterProiIPR017856. Integrase_Zn-bd_dom-like_N.
IPR002876. Transcrip_reg_TACO1-like.
IPR026563. Transcrip_reg_TACO1-like_dom2.
IPR026564. Transcrip_reg_TACO1-like_dom3.
IPR029072. YebC-like.
[Graphical view]
PANTHERiPTHR12532. PTHR12532. 1 hit.
PfamiPF01709. Transcrip_reg. 1 hit.
[Graphical view]
SUPFAMiSSF75625. SSF75625. 1 hit.
TIGRFAMsiTIGR01033. TIGR01033. 1 hit.

Sequencei

Sequence statusi: Complete.

P0A8A0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGHSKWANT RHRKAAQDAK RGKIFTKIIR ELVTAAKLGG GDPDANPRLR
60 70 80 90 100
AAVDKALSNN MTRDTLNRAI ARGVGGDDDA NMETIIYEGY GPGGTAIMIE
110 120 130 140 150
CLSDNRNRTV AEVRHAFSKC GGNLGTDGSV AYLFSKKGVI SFEKGDEDTI
160 170 180 190 200
MEAALEAGAE DVVTYDDGAI DVYTAWEEMG KVRDALEAAG LKADSAEVSM
210 220 230 240
IPSTKADMDA ETAPKLMRLI DMLEDCDDVQ EVYHNGEISD EVAATL
Length:246
Mass (Da):26,423
Last modified:June 7, 2005 - v1
Checksum:iF02F71E7DAF39C18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10165 Genomic DNA. Translation: BAA01031.1.
X59551 Genomic DNA. Translation: CAA42126.1.
U00096 Genomic DNA. Translation: AAC74934.1.
AP009048 Genomic DNA. Translation: BAA15675.1.
PIRiC38113.
RefSeqiNP_416378.1. NC_000913.3.
WP_000907248.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74934; AAC74934; b1864.
BAA15675; BAA15675; BAA15675.
GeneIDi946379.
KEGGiecj:JW1853.
eco:b1864.
PATRICi32119051. VBIEscCol129921_1943.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10165 Genomic DNA. Translation: BAA01031.1.
X59551 Genomic DNA. Translation: CAA42126.1.
U00096 Genomic DNA. Translation: AAC74934.1.
AP009048 Genomic DNA. Translation: BAA15675.1.
PIRiC38113.
RefSeqiNP_416378.1. NC_000913.3.
WP_000907248.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KONX-ray2.20A1-246[»]
ProteinModelPortaliP0A8A0.
SMRiP0A8A0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261689. 74 interactors.
DIPiDIP-47886N.
IntActiP0A8A0. 22 interactors.
MINTiMINT-1241216.
STRINGi511145.b1864.

Proteomic databases

PaxDbiP0A8A0.
PRIDEiP0A8A0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74934; AAC74934; b1864.
BAA15675; BAA15675; BAA15675.
GeneIDi946379.
KEGGiecj:JW1853.
eco:b1864.
PATRICi32119051. VBIEscCol129921_1943.

Organism-specific databases

EchoBASEiEB1127.
EcoGeneiEG11137. yebC.

Phylogenomic databases

eggNOGiENOG4105CDY. Bacteria.
COG0217. LUCA.
HOGENOMiHOG000228370.
InParanoidiP0A8A0.
OMAiMTRNGGS.
PhylomeDBiP0A8A0.

Enzyme and pathway databases

BioCyciEcoCyc:EG11137-MONOMER.
ECOL316407:JW1853-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0A8A0.
PROiP0A8A0.

Family and domain databases

Gene3Di1.10.10.200. 1 hit.
3.30.1270.10. 2 hits.
3.30.70.980. 1 hit.
HAMAPiMF_00693. Transcrip_reg_TACO1. 1 hit.
InterProiIPR017856. Integrase_Zn-bd_dom-like_N.
IPR002876. Transcrip_reg_TACO1-like.
IPR026563. Transcrip_reg_TACO1-like_dom2.
IPR026564. Transcrip_reg_TACO1-like_dom3.
IPR029072. YebC-like.
[Graphical view]
PANTHERiPTHR12532. PTHR12532. 1 hit.
PfamiPF01709. Transcrip_reg. 1 hit.
[Graphical view]
SUPFAMiSSF75625. SSF75625. 1 hit.
TIGRFAMsiTIGR01033. TIGR01033. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYEBC_ECOLI
AccessioniPrimary (citable) accession number: P0A8A0
Secondary accession number(s): P24237
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: November 2, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.