50S ribosomal protein L36 - Escherichia coli (strain K12)

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Reviewed, UniProtKB/Swiss-Prot P0A7Q6 (RL36_ECOLI)

Last modified June 16, 2009. Version 40. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
50S ribosomal protein L36
Alternative name(s):
Ribosomal protein B

Gene names

Name:	rpmJ
Ordered Locus Names:	b3299, JW3261

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	38 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities	Belongs to the ribosomal protein L36P family.
Mass spectrometry	Molecular mass is 4364.2 Da from positions 1 - 38. Determined by MALDI. Ref.5

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Direct protein sequencing
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

38

50S ribosomal protein L36 HAMAP MF_00251

PRO_0000126183

Secondary structure

1

.

.

.

.

.

38

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P0A7Q6-1 [UniParc].

Last modified June 7, 2005. Version 1.
Checksum: C4785CEC0578EB24
Show »

38

4,364

        10         20         30 
MKVRASVKKL CRNCKIVKRD GVIRVICSAE PKHKQRQG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"DNA sequence of the promoter region for the alpha ribosomal protein operon in Escherichia coli." Post L.E., Arfsten A.E., Davis G.R., Nomura M. J. Biol. Chem. 255:4653-4659(1980) [PubMed: 6154696] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]	"Primary structures of and genes for new ribosomal proteins A and B in Escherichia coli." Wada A., Sako T. J. Biochem. 101:817-820(1987) [PubMed: 3298224] [Abstract] Cited for: PARTIAL PROTEIN SEQUENCE OF 2-17.
[5]	"Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry." Arnold R.J., Reilly J.P. Anal. Biochem. 269:105-112(1999) [PubMed: 10094780] [Abstract] Cited for: MASS SPECTROMETRY. Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
[6]	"Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement." Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., Chapman M.S., Frank J. Cell 113:789-801(2003) [PubMed: 12809609] [Abstract] Cited for: STRUCTURE BY ELECTRON MICROSCOPY (11.50 ANGSTROMS). Strain: MRE-600.
[7]	"Structures of the bacterial ribosome at 3.5 A resolution." Schuwirth B.S., Borovinskaya M.A., Hau C.W., Zhang W., Vila-Sanjurjo A., Holton J.M., Cate J.H.D. Science 310:827-834(2005) [PubMed: 16272117] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES. Strain: MRE-600.
+	Additional computationally mapped references.

Cross-references

Sequence databases

M12432 Genomic DNA. Translation: AAA83902.1.
X01563 Genomic DNA. Translation: CAA25726.1.
U18997 Genomic DNA. Translation: AAA58096.1.
U00096 Genomic DNA. Translation: AAC76324.1.
AP009048 Genomic DNA. Translation: BAE77992.1.

PIR

R5EC36. S14057.

RefSeq

AP_004491.1.
NP_417758.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1P85	electron microscopy	12.30	4	1-38	[»]
1P86	electron microscopy	11.50	4	1-38	[»]
1VS6	X-ray	3.46	4	1-38	[»]
1VS8	X-ray	3.46	4	1-38	[»]
2AW4	X-ray	3.46	4	1-38	[»]
2AWB	X-ray	3.46	4	1-38	[»]
2I2T	X-ray	3.22	4	1-38	[»]
2I2V	X-ray	3.22	4	1-38	[»]
2J28	electron microscopy	8.00	4	1-38	[»]
2QAM	X-ray	3.21	4	1-38	[»]
2QAO	X-ray	3.21	4	1-38	[»]
2QBA	X-ray	3.54	4	1-38	[»]
2QBC	X-ray	3.54	4	1-38	[»]
2QBE	X-ray	3.30	4	1-38	[»]
2QBG	X-ray	3.30	4	1-38	[»]
2QBI	X-ray	4.00	4	1-38	[»]
2QBK	X-ray	4.00	4	1-38	[»]
2QOV	X-ray	3.93	4	1-38	[»]
2QOX	X-ray	3.93	4	1-38	[»]
2QOZ	X-ray	3.50	4	1-38	[»]
2QP1	X-ray	3.50	4	1-38	[»]
2RDO	electron microscopy	9.10	4	1-38	[»]
2VHM	X-ray	3.74	4	1-38	[»]
2VHN	X-ray	3.74	4	1-38	[»]
2Z4L	X-ray	4.45	4	1-38	[»]
2Z4N	X-ray	4.45	4	1-38	[»]
3BBX	electron microscopy	10.00	4	1-38	[»]
3DF2	X-ray	3.50	4	1-38	[»]
3DF4	X-ray	3.50	4	1-38	[»]
3FIK	electron microscopy	-	4	1-38	[»]

ModBase

Genome annotation databases

GeneID

GenomeReviews

Gene locus JW3261 in contig AP009048_GR.
Gene locus b3299 in contig U00096_GR.

KEGG

ecj:JW3261.
eco:b3299.

Organism-specific databases

EchoBASE

EcoGene

EG11232. rpmJ.

CMR

Phylogenomic databases

HOGENOM

Enzyme and pathway databases

BioCyc

EcoCyc:EG11232-MON.

Family and domain databases

HAMAP

MF_00251.
[Tree]

InterPro

IPR000473. Ribosomal_L36.
[Graphical view]

PANTHER

PTHR18804. Ribosomal_L36. 1 hit.

Pfam

PF00444. Ribosomal_L36. 1 hit.
[Graphical view]

ProDom

PD002101. Ribosomal_L36. 1 hit.
[Graphical view] [Entries sharing at least one domain]

TIGRFAMs

TIGR01022. rpmJ_bact. 1 hit.

PROSITE

PS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

RL36_ECOLI

Accession

Primary (citable) accession number: P0A7Q6
Secondary accession number(s): P21194, Q2M6W4

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 7, 2005
Last sequence update:	June 7, 2005
Last modified:	June 16, 2009
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Ribosomal proteins

Ribosomal proteins families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents