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P0A7Q6 (RL36_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L36
Alternative name(s):
Ribosomal protein B
Gene names
Name:rpmJ
Ordered Locus Names:b3299, JW3261
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length38 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L36P family.

Mass spectrometry

Molecular mass is 4364.2 Da from positions 1 - 38. Determined by MALDI. Ref.5

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 383850S ribosomal protein L36 HAMAP-Rule MF_00251
PRO_0000126183

Secondary structure

........... 38
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P0A7Q6 [UniParc].

Last modified June 7, 2005. Version 1.
Checksum: C4785CEC0578EB24

FASTA384,364
        10         20         30 
MKVRASVKKL CRNCKIVKRD GVIRVICSAE PKHKQRQG 

« Hide

References

« Hide 'large scale' references
[1]"DNA sequence of the promoter region for the alpha ribosomal protein operon in Escherichia coli."
Post L.E., Arfsten A.E., Davis G.R., Nomura M.
J. Biol. Chem. 255:4653-4659(1980) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[3]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]"Primary structures of and genes for new ribosomal proteins A and B in Escherichia coli."
Wada A., Sako T.
J. Biochem. 101:817-820(1987) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-17.
[5]"Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry."
Arnold R.J., Reilly J.P.
Anal. Biochem. 269:105-112(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
[6]"Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement."
Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., Chapman M.S., Frank J.
Cell 113:789-801(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (11.50 ANGSTROMS).
Strain: MRE-600.
[7]"Structures of the bacterial ribosome at 3.5 A resolution."
Schuwirth B.S., Borovinskaya M.A., Hau C.W., Zhang W., Vila-Sanjurjo A., Holton J.M., Cate J.H.D.
Science 310:827-834(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES.
Strain: MRE-600.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M12432 Genomic DNA. Translation: AAA83902.1.
X01563 Genomic DNA. Translation: CAA25726.1.
U18997 Genomic DNA. Translation: AAA58096.1.
U00096 Genomic DNA. Translation: AAC76324.1.
AP009048 Genomic DNA. Translation: BAE77992.1.
PIRR5EC36. S14057.
RefSeqNP_417758.1. NC_000913.3.
YP_492133.1. NC_007779.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1P85electron microscopy12.3041-38[»]
1P86electron microscopy11.5041-38[»]
1VS6X-ray3.4641-38[»]
1VS8X-ray3.4641-38[»]
1VT2X-ray3.3041-38[»]
2AW4X-ray3.4641-38[»]
2AWBX-ray3.4641-38[»]
2I2TX-ray3.2241-38[»]
2I2VX-ray3.2241-38[»]
2J28electron microscopy8.0041-38[»]
2QAMX-ray3.2141-38[»]
2QAOX-ray3.2141-38[»]
2QBAX-ray3.5441-38[»]
2QBCX-ray3.5441-38[»]
2QBEX-ray3.3041-38[»]
2QBGX-ray3.3041-38[»]
2QBIX-ray4.0041-38[»]
2QBKX-ray4.0041-38[»]
2QOVX-ray3.9341-38[»]
2QOXX-ray3.9341-38[»]
2QOZX-ray3.5041-38[»]
2QP1X-ray3.5041-38[»]
2RDOelectron microscopy9.1041-38[»]
2VHMX-ray3.7441-38[»]
2VHNX-ray3.7441-38[»]
2WWQelectron microscopy5.8081-38[»]
2Z4LX-ray4.4541-38[»]
2Z4NX-ray4.4541-38[»]
3BBXelectron microscopy10.0041-38[»]
3DF2X-ray3.5041-38[»]
3DF4X-ray3.5041-38[»]
3E1Belectron microscopy-X1-38[»]
3E1Delectron microscopy-X1-38[»]
3FIKelectron microscopy6.7041-38[»]
3I1NX-ray3.1941-38[»]
3I1PX-ray3.1941-38[»]
3I1RX-ray3.8141-38[»]
3I1TX-ray3.8141-38[»]
3I20X-ray3.7141-38[»]
3I22X-ray3.7141-38[»]
3IZTelectron microscopy13.20g1-38[»]
3IZUelectron microscopy8.25g1-38[»]
3J01electron microscopy-41-38[»]
3J0Telectron microscopy12.1071-38[»]
3J0Welectron microscopy14.7071-38[»]
3J0Yelectron microscopy13.5071-38[»]
3J11electron microscopy13.1071-38[»]
3J12electron microscopy11.5071-38[»]
3J14electron microscopy11.5071-38[»]
3J19electron microscopy8.3041-38[»]
3J37electron microscopy9.8091-38[»]
3J4Xelectron microscopy12.0041-38[»]
3J50electron microscopy20.0041-38[»]
3J51electron microscopy17.0041-38[»]
3J52electron microscopy12.0041-38[»]
3J54electron microscopy13.0041-38[»]
3J56electron microscopy15.0041-38[»]
3J58electron microscopy17.0041-38[»]
3J5Aelectron microscopy12.0041-38[»]
3J5Celectron microscopy17.0041-38[»]
3J5Eelectron microscopy17.0041-38[»]
3J5Gelectron microscopy20.0041-38[»]
3J5Ielectron microscopy15.0041-38[»]
3J5Kelectron microscopy9.0041-38[»]
3J5Oelectron microscopy6.8041-38[»]
3J5Uelectron microscopy7.6071-38[»]
3J5Welectron microscopy7.6081-38[»]
3KCRelectron microscopy-41-38[»]
3OASX-ray3.2541-38[»]
3OATX-ray3.2541-38[»]
3OFCX-ray3.1941-38[»]
3OFDX-ray3.1941-38[»]
3OFQX-ray3.1041-38[»]
3OFRX-ray3.1041-38[»]
3OFZX-ray3.2941-38[»]
3OG0X-ray3.2941-38[»]
3ORBX-ray3.3041-38[»]
3R8SX-ray3.0041-38[»]
3R8TX-ray3.0041-38[»]
3SGFX-ray3.2081-38[»]
3UOSX-ray3.7081-38[»]
4GARX-ray3.3041-38[»]
4GAUX-ray3.3041-38[»]
4KIXX-ray2.9041-38[»]
4KIZX-ray2.9041-38[»]
4KJ1X-ray2.9041-38[»]
4KJ3X-ray2.9041-38[»]
4KJ5X-ray2.9041-38[»]
4KJ7X-ray2.9041-38[»]
4KJ9X-ray2.9041-38[»]
4KJBX-ray2.9041-38[»]
ProteinModelPortalP0A7Q6.
SMRP0A7Q6. Positions 1-38.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP0A7Q6. 2 interactions.
STRING511145.b3299.

Chemistry

ChEMBLCHEMBL2363135.

Proteomic databases

PaxDbP0A7Q6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC76324; AAC76324; b3299.
BAE77992; BAE77992; BAE77992.
GeneID12934393.
947805.
KEGGecj:Y75_p3877.
eco:b3299.
PATRIC32122030. VBIEscCol129921_3392.

Organism-specific databases

EchoBASEEB1214.
EcoGeneEG11232. rpmJ.

Phylogenomic databases

eggNOGCOG0257.
HOGENOMHOG000111584.
KOK02919.
OrthoDBEOG676ZC2.
PhylomeDBP0A7Q6.
ProtClustDBPRK00465.

Enzyme and pathway databases

BioCycEcoCyc:EG11232-MONOMER.
ECOL316407:JW3261-MONOMER.

Gene expression databases

GenevestigatorP0A7Q6.

Family and domain databases

HAMAPMF_00251. Ribosomal_L36.
InterProIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERPTHR18804. PTHR18804. 1 hit.
PfamPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMSSF57840. SSF57840. 1 hit.
TIGRFAMsTIGR01022. rpmJ_bact. 1 hit.
PROSITEPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP0A7Q6.
PROP0A7Q6.

Entry information

Entry nameRL36_ECOLI
AccessionPrimary (citable) accession number: P0A7Q6
Secondary accession number(s): P21194, Q2M6W4
Entry history
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 7, 2005
Last modified: April 16, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene