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P0A7Q6

- RL36_ECOLI

UniProt

P0A7Q6 - RL36_ECOLI

Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciEcoCyc:EG11232-MONOMER.
    ECOL316407:JW3261-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L36
    Alternative name(s):
    Ribosomal protein B
    Gene namesi
    Name:rpmJ
    Ordered Locus Names:b3299, JW3261
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

    Organism-specific databases

    EcoGeneiEG11232. rpmJ.

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 383850S ribosomal protein L36PRO_0000126183Add
    BLAST

    Proteomic databases

    PaxDbiP0A7Q6.

    Expressioni

    Gene expression databases

    GenevestigatoriP0A7Q6.

    Interactioni

    Protein-protein interaction databases

    IntActiP0A7Q6. 2 interactions.
    STRINGi511145.b3299.

    Structurei

    Secondary structure

    1
    38
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi11 – 144
    Beta strandi17 – 193
    Beta strandi22 – 254
    Beta strandi27 – 293
    Helixi31 – 333

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1P85electron microscopy12.3041-38[»]
    1P86electron microscopy11.5041-38[»]
    1VS6X-ray3.4641-38[»]
    1VS8X-ray3.4641-38[»]
    1VT2X-ray3.3041-38[»]
    2AW4X-ray3.4641-38[»]
    2AWBX-ray3.4641-38[»]
    2I2TX-ray3.2241-38[»]
    2I2VX-ray3.2241-38[»]
    2J28electron microscopy8.0041-38[»]
    2QAMX-ray3.2141-38[»]
    2QAOX-ray3.2141-38[»]
    2QBAX-ray3.5441-38[»]
    2QBCX-ray3.5441-38[»]
    2QBEX-ray3.3041-38[»]
    2QBGX-ray3.3041-38[»]
    2QBIX-ray4.0041-38[»]
    2QBKX-ray4.0041-38[»]
    2QOVX-ray3.9341-38[»]
    2QOXX-ray3.9341-38[»]
    2QOZX-ray3.5041-38[»]
    2QP1X-ray3.5041-38[»]
    2RDOelectron microscopy9.1041-38[»]
    2VHMX-ray3.7441-38[»]
    2VHNX-ray3.7441-38[»]
    2WWQelectron microscopy5.8081-38[»]
    2Z4LX-ray4.4541-38[»]
    2Z4NX-ray4.4541-38[»]
    3BBXelectron microscopy10.0041-38[»]
    3DF2X-ray3.5041-38[»]
    3DF4X-ray3.5041-38[»]
    3E1Belectron microscopy-X1-38[»]
    3E1Delectron microscopy-X1-38[»]
    3FIKelectron microscopy6.7041-38[»]
    3I1NX-ray3.1941-38[»]
    3I1PX-ray3.1941-38[»]
    3I1RX-ray3.8141-38[»]
    3I1TX-ray3.8141-38[»]
    3I20X-ray3.7141-38[»]
    3I22X-ray3.7141-38[»]
    3IZTelectron microscopy13.20g1-38[»]
    3IZUelectron microscopy8.25g1-38[»]
    3J01electron microscopy-41-38[»]
    3J0Telectron microscopy12.1071-38[»]
    3J0Welectron microscopy14.7071-38[»]
    3J0Yelectron microscopy13.5071-38[»]
    3J11electron microscopy13.1071-38[»]
    3J12electron microscopy11.5071-38[»]
    3J14electron microscopy11.5071-38[»]
    3J19electron microscopy8.3041-38[»]
    3J37electron microscopy9.8091-38[»]
    3J4Xelectron microscopy12.0041-38[»]
    3J50electron microscopy20.0041-38[»]
    3J51electron microscopy17.0041-38[»]
    3J52electron microscopy12.0041-38[»]
    3J54electron microscopy13.0041-38[»]
    3J56electron microscopy15.0041-38[»]
    3J58electron microscopy17.0041-38[»]
    3J5Aelectron microscopy12.0041-38[»]
    3J5Celectron microscopy17.0041-38[»]
    3J5Eelectron microscopy17.0041-38[»]
    3J5Gelectron microscopy20.0041-38[»]
    3J5Ielectron microscopy15.0041-38[»]
    3J5Kelectron microscopy9.0041-38[»]
    3J5Lelectron microscopy6.6041-38[»]
    3J5Oelectron microscopy6.8041-38[»]
    3J5Uelectron microscopy7.6071-38[»]
    3J5Welectron microscopy7.6081-38[»]
    3KCRelectron microscopy-41-38[»]
    3OASX-ray3.2541-38[»]
    3OATX-ray3.2541-38[»]
    3OFCX-ray3.1941-38[»]
    3OFDX-ray3.1941-38[»]
    3OFQX-ray3.1041-38[»]
    3OFRX-ray3.1041-38[»]
    3OFZX-ray3.2941-38[»]
    3OG0X-ray3.2941-38[»]
    3ORBX-ray3.3041-38[»]
    3R8SX-ray3.0041-38[»]
    3R8TX-ray3.0041-38[»]
    3SGFX-ray3.2081-38[»]
    3UOSX-ray3.7081-38[»]
    4CSUelectron microscopy5.5081-38[»]
    4GARX-ray3.3041-38[»]
    4GAUX-ray3.3041-38[»]
    4KIXX-ray2.9041-38[»]
    4KIZX-ray2.9041-38[»]
    4KJ1X-ray2.9041-38[»]
    4KJ3X-ray2.9041-38[»]
    4KJ5X-ray2.9041-38[»]
    4KJ7X-ray2.9041-38[»]
    4KJ9X-ray2.9041-38[»]
    4KJBX-ray2.9041-38[»]
    ProteinModelPortaliP0A7Q6.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP0A7Q6.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L36P family.Curated

    Phylogenomic databases

    eggNOGiCOG0257.
    HOGENOMiHOG000111584.
    KOiK02919.
    OMAiNEAHEKM.
    OrthoDBiEOG676ZC2.
    PhylomeDBiP0A7Q6.

    Family and domain databases

    HAMAPiMF_00251. Ribosomal_L36.
    InterProiIPR000473. Ribosomal_L36.
    [Graphical view]
    PANTHERiPTHR18804. PTHR18804. 1 hit.
    PfamiPF00444. Ribosomal_L36. 1 hit.
    [Graphical view]
    SUPFAMiSSF57840. SSF57840. 1 hit.
    TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
    PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
    [Graphical view]
    ProtoNetiSearch...

    Sequencei

    Sequence statusi: Complete.

    P0A7Q6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKVRASVKKL CRNCKIVKRD GVIRVICSAE PKHKQRQG                38
    Length:38
    Mass (Da):4,364
    Last modified:June 7, 2005 - v1
    Checksum:iC4785CEC0578EB24
    GO

    Mass spectrometryi

    Molecular mass is 4364.2 Da from positions 1 - 38. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M12432 Genomic DNA. Translation: AAA83902.1.
    X01563 Genomic DNA. Translation: CAA25726.1.
    U18997 Genomic DNA. Translation: AAA58096.1.
    U00096 Genomic DNA. Translation: AAC76324.1.
    AP009048 Genomic DNA. Translation: BAE77992.1.
    PIRiS14057. R5EC36.
    RefSeqiNP_417758.1. NC_000913.3.
    YP_492133.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC76324; AAC76324; b3299.
    BAE77992; BAE77992; BAE77992.
    GeneIDi12934393.
    947805.
    KEGGiecj:Y75_p3877.
    eco:b3299.
    PATRICi32122030. VBIEscCol129921_3392.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M12432 Genomic DNA. Translation: AAA83902.1 .
    X01563 Genomic DNA. Translation: CAA25726.1 .
    U18997 Genomic DNA. Translation: AAA58096.1 .
    U00096 Genomic DNA. Translation: AAC76324.1 .
    AP009048 Genomic DNA. Translation: BAE77992.1 .
    PIRi S14057. R5EC36.
    RefSeqi NP_417758.1. NC_000913.3.
    YP_492133.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1P85 electron microscopy 12.30 4 1-38 [» ]
    1P86 electron microscopy 11.50 4 1-38 [» ]
    1VS6 X-ray 3.46 4 1-38 [» ]
    1VS8 X-ray 3.46 4 1-38 [» ]
    1VT2 X-ray 3.30 4 1-38 [» ]
    2AW4 X-ray 3.46 4 1-38 [» ]
    2AWB X-ray 3.46 4 1-38 [» ]
    2I2T X-ray 3.22 4 1-38 [» ]
    2I2V X-ray 3.22 4 1-38 [» ]
    2J28 electron microscopy 8.00 4 1-38 [» ]
    2QAM X-ray 3.21 4 1-38 [» ]
    2QAO X-ray 3.21 4 1-38 [» ]
    2QBA X-ray 3.54 4 1-38 [» ]
    2QBC X-ray 3.54 4 1-38 [» ]
    2QBE X-ray 3.30 4 1-38 [» ]
    2QBG X-ray 3.30 4 1-38 [» ]
    2QBI X-ray 4.00 4 1-38 [» ]
    2QBK X-ray 4.00 4 1-38 [» ]
    2QOV X-ray 3.93 4 1-38 [» ]
    2QOX X-ray 3.93 4 1-38 [» ]
    2QOZ X-ray 3.50 4 1-38 [» ]
    2QP1 X-ray 3.50 4 1-38 [» ]
    2RDO electron microscopy 9.10 4 1-38 [» ]
    2VHM X-ray 3.74 4 1-38 [» ]
    2VHN X-ray 3.74 4 1-38 [» ]
    2WWQ electron microscopy 5.80 8 1-38 [» ]
    2Z4L X-ray 4.45 4 1-38 [» ]
    2Z4N X-ray 4.45 4 1-38 [» ]
    3BBX electron microscopy 10.00 4 1-38 [» ]
    3DF2 X-ray 3.50 4 1-38 [» ]
    3DF4 X-ray 3.50 4 1-38 [» ]
    3E1B electron microscopy - X 1-38 [» ]
    3E1D electron microscopy - X 1-38 [» ]
    3FIK electron microscopy 6.70 4 1-38 [» ]
    3I1N X-ray 3.19 4 1-38 [» ]
    3I1P X-ray 3.19 4 1-38 [» ]
    3I1R X-ray 3.81 4 1-38 [» ]
    3I1T X-ray 3.81 4 1-38 [» ]
    3I20 X-ray 3.71 4 1-38 [» ]
    3I22 X-ray 3.71 4 1-38 [» ]
    3IZT electron microscopy 13.20 g 1-38 [» ]
    3IZU electron microscopy 8.25 g 1-38 [» ]
    3J01 electron microscopy - 4 1-38 [» ]
    3J0T electron microscopy 12.10 7 1-38 [» ]
    3J0W electron microscopy 14.70 7 1-38 [» ]
    3J0Y electron microscopy 13.50 7 1-38 [» ]
    3J11 electron microscopy 13.10 7 1-38 [» ]
    3J12 electron microscopy 11.50 7 1-38 [» ]
    3J14 electron microscopy 11.50 7 1-38 [» ]
    3J19 electron microscopy 8.30 4 1-38 [» ]
    3J37 electron microscopy 9.80 9 1-38 [» ]
    3J4X electron microscopy 12.00 4 1-38 [» ]
    3J50 electron microscopy 20.00 4 1-38 [» ]
    3J51 electron microscopy 17.00 4 1-38 [» ]
    3J52 electron microscopy 12.00 4 1-38 [» ]
    3J54 electron microscopy 13.00 4 1-38 [» ]
    3J56 electron microscopy 15.00 4 1-38 [» ]
    3J58 electron microscopy 17.00 4 1-38 [» ]
    3J5A electron microscopy 12.00 4 1-38 [» ]
    3J5C electron microscopy 17.00 4 1-38 [» ]
    3J5E electron microscopy 17.00 4 1-38 [» ]
    3J5G electron microscopy 20.00 4 1-38 [» ]
    3J5I electron microscopy 15.00 4 1-38 [» ]
    3J5K electron microscopy 9.00 4 1-38 [» ]
    3J5L electron microscopy 6.60 4 1-38 [» ]
    3J5O electron microscopy 6.80 4 1-38 [» ]
    3J5U electron microscopy 7.60 7 1-38 [» ]
    3J5W electron microscopy 7.60 8 1-38 [» ]
    3KCR electron microscopy - 4 1-38 [» ]
    3OAS X-ray 3.25 4 1-38 [» ]
    3OAT X-ray 3.25 4 1-38 [» ]
    3OFC X-ray 3.19 4 1-38 [» ]
    3OFD X-ray 3.19 4 1-38 [» ]
    3OFQ X-ray 3.10 4 1-38 [» ]
    3OFR X-ray 3.10 4 1-38 [» ]
    3OFZ X-ray 3.29 4 1-38 [» ]
    3OG0 X-ray 3.29 4 1-38 [» ]
    3ORB X-ray 3.30 4 1-38 [» ]
    3R8S X-ray 3.00 4 1-38 [» ]
    3R8T X-ray 3.00 4 1-38 [» ]
    3SGF X-ray 3.20 8 1-38 [» ]
    3UOS X-ray 3.70 8 1-38 [» ]
    4CSU electron microscopy 5.50 8 1-38 [» ]
    4GAR X-ray 3.30 4 1-38 [» ]
    4GAU X-ray 3.30 4 1-38 [» ]
    4KIX X-ray 2.90 4 1-38 [» ]
    4KIZ X-ray 2.90 4 1-38 [» ]
    4KJ1 X-ray 2.90 4 1-38 [» ]
    4KJ3 X-ray 2.90 4 1-38 [» ]
    4KJ5 X-ray 2.90 4 1-38 [» ]
    4KJ7 X-ray 2.90 4 1-38 [» ]
    4KJ9 X-ray 2.90 4 1-38 [» ]
    4KJB X-ray 2.90 4 1-38 [» ]
    ProteinModelPortali P0A7Q6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P0A7Q6. 2 interactions.
    STRINGi 511145.b3299.

    Chemistry

    ChEMBLi CHEMBL2363135.

    Proteomic databases

    PaxDbi P0A7Q6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC76324 ; AAC76324 ; b3299 .
    BAE77992 ; BAE77992 ; BAE77992 .
    GeneIDi 12934393.
    947805.
    KEGGi ecj:Y75_p3877.
    eco:b3299.
    PATRICi 32122030. VBIEscCol129921_3392.

    Organism-specific databases

    EchoBASEi EB1214.
    EcoGenei EG11232. rpmJ.

    Phylogenomic databases

    eggNOGi COG0257.
    HOGENOMi HOG000111584.
    KOi K02919.
    OMAi NEAHEKM.
    OrthoDBi EOG676ZC2.
    PhylomeDBi P0A7Q6.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG11232-MONOMER.
    ECOL316407:JW3261-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P0A7Q6.
    PROi P0A7Q6.

    Gene expression databases

    Genevestigatori P0A7Q6.

    Family and domain databases

    HAMAPi MF_00251. Ribosomal_L36.
    InterProi IPR000473. Ribosomal_L36.
    [Graphical view ]
    PANTHERi PTHR18804. PTHR18804. 1 hit.
    Pfami PF00444. Ribosomal_L36. 1 hit.
    [Graphical view ]
    SUPFAMi SSF57840. SSF57840. 1 hit.
    TIGRFAMsi TIGR01022. rpmJ_bact. 1 hit.
    PROSITEi PS00828. RIBOSOMAL_L36. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "DNA sequence of the promoter region for the alpha ribosomal protein operon in Escherichia coli."
      Post L.E., Arfsten A.E., Davis G.R., Nomura M.
      J. Biol. Chem. 255:4653-4659(1980) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    4. "Primary structures of and genes for new ribosomal proteins A and B in Escherichia coli."
      Wada A., Sako T.
      J. Biochem. 101:817-820(1987) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-17.
    5. "Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry."
      Arnold R.J., Reilly J.P.
      Anal. Biochem. 269:105-112(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
      Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
    6. "Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement."
      Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., Chapman M.S., Frank J.
      Cell 113:789-801(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (11.50 ANGSTROMS).
      Strain: MRE-600.
    7. Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES.
      Strain: MRE-600.

    Entry informationi

    Entry nameiRL36_ECOLI
    AccessioniPrimary (citable) accession number: P0A7Q6
    Secondary accession number(s): P21194, Q2M6W4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 7, 2005
    Last sequence update: June 7, 2005
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. Ribosomal proteins
      Ribosomal proteins families and list of entries
    4. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3

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