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P0A7P5

- RL34_ECOLI

UniProt

P0A7P5 - RL34_ECOLI

Protein

50S ribosomal protein L34

Gene

rpmH

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciEcoCyc:EG10892-MONOMER.
    ECOL316407:JW3680-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L34
    Gene namesi
    Name:rpmH
    Synonyms:rimA, ssaF
    Ordered Locus Names:b3703, JW3680
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG10892. rpmH.

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 464650S ribosomal protein L34PRO_0000187377Add
    BLAST

    Proteomic databases

    PaxDbiP0A7P5.
    PRIDEiP0A7P5.

    Expressioni

    Gene expression databases

    GenevestigatoriP0A7P5.

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-581N.
    IntActiP0A7P5. 3 interactions.
    STRINGi511145.b3703.

    Structurei

    Secondary structure

    1
    46
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi9 – 168
    Helixi18 – 225
    Helixi25 – 3612
    Beta strandi42 – 443

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1VS6X-ray3.4621-46[»]
    1VS8X-ray3.4621-46[»]
    1VT2X-ray3.3021-46[»]
    2AW4X-ray3.4621-46[»]
    2AWBX-ray3.4621-46[»]
    2I2TX-ray3.2221-46[»]
    2I2VX-ray3.2221-46[»]
    2J28electron microscopy8.0021-46[»]
    2QAMX-ray3.2121-46[»]
    2QAOX-ray3.2121-46[»]
    2QBAX-ray3.5421-46[»]
    2QBCX-ray3.5421-46[»]
    2QBEX-ray3.3021-46[»]
    2QBGX-ray3.3021-46[»]
    2QBIX-ray4.0021-46[»]
    2QBKX-ray4.0021-46[»]
    2QOVX-ray3.9321-46[»]
    2QOXX-ray3.9321-46[»]
    2QOZX-ray3.5021-46[»]
    2QP1X-ray3.5021-46[»]
    2RDOelectron microscopy9.1021-46[»]
    2VHMX-ray3.7421-46[»]
    2VHNX-ray3.7421-46[»]
    2WWQelectron microscopy5.8061-46[»]
    2Z4LX-ray4.4521-46[»]
    2Z4NX-ray4.4521-46[»]
    3BBXelectron microscopy10.0021-46[»]
    3DF2X-ray3.5021-46[»]
    3DF4X-ray3.5021-46[»]
    3E1Belectron microscopy-V1-46[»]
    3E1Delectron microscopy-V1-46[»]
    3FIKelectron microscopy6.7021-46[»]
    3I1NX-ray3.1921-46[»]
    3I1PX-ray3.1921-46[»]
    3I1RX-ray3.8121-46[»]
    3I1TX-ray3.8121-46[»]
    3I20X-ray3.7121-46[»]
    3I22X-ray3.7121-46[»]
    3IZTelectron microscopy-e1-46[»]
    3IZUelectron microscopy-e1-46[»]
    3J01electron microscopy-21-46[»]
    3J0Telectron microscopy12.1051-46[»]
    3J0Welectron microscopy14.7051-46[»]
    3J0Yelectron microscopy13.5051-46[»]
    3J11electron microscopy13.1051-46[»]
    3J12electron microscopy11.5051-46[»]
    3J14electron microscopy11.5051-46[»]
    3J19electron microscopy8.3021-46[»]
    3J37electron microscopy9.8071-46[»]
    3J4Xelectron microscopy12.0021-46[»]
    3J50electron microscopy20.0021-46[»]
    3J51electron microscopy17.0021-46[»]
    3J52electron microscopy12.0021-46[»]
    3J54electron microscopy13.0021-46[»]
    3J56electron microscopy15.0021-46[»]
    3J58electron microscopy17.0021-46[»]
    3J5Aelectron microscopy12.0021-46[»]
    3J5Celectron microscopy17.0021-46[»]
    3J5Eelectron microscopy17.0021-46[»]
    3J5Gelectron microscopy20.0021-46[»]
    3J5Ielectron microscopy15.0021-46[»]
    3J5Kelectron microscopy9.0021-46[»]
    3J5Lelectron microscopy6.6021-46[»]
    3J5Oelectron microscopy6.8021-46[»]
    3J5Uelectron microscopy7.6051-46[»]
    3J5Welectron microscopy7.6061-46[»]
    3KCRelectron microscopy-21-46[»]
    3OASX-ray3.2521-46[»]
    3OATX-ray3.2521-46[»]
    3OFCX-ray3.1921-46[»]
    3OFDX-ray3.1921-46[»]
    3OFQX-ray3.1021-46[»]
    3OFRX-ray3.1021-46[»]
    3OFZX-ray3.2921-46[»]
    3OG0X-ray3.2921-46[»]
    3ORBX-ray3.3021-46[»]
    3R8SX-ray3.0021-46[»]
    3R8TX-ray3.0021-46[»]
    3SGFX-ray3.2061-46[»]
    3UOSX-ray3.7061-46[»]
    4CSUelectron microscopy5.5061-46[»]
    4GARX-ray3.3021-46[»]
    4GAUX-ray3.3021-46[»]
    4KIXX-ray2.9021-46[»]
    4KIZX-ray2.9021-46[»]
    4KJ1X-ray2.9021-46[»]
    4KJ3X-ray2.9021-46[»]
    4KJ5X-ray2.9021-46[»]
    4KJ7X-ray2.9021-46[»]
    4KJ9X-ray2.9021-46[»]
    4KJBX-ray2.9021-46[»]
    ProteinModelPortaliP0A7P5.
    SMRiP0A7P5. Positions 3-43.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP0A7P5.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L34P family.Curated

    Phylogenomic databases

    eggNOGiCOG0230.
    HOGENOMiHOG000111572.
    KOiK02914.
    OrthoDBiEOG6DZF71.
    PhylomeDBiP0A7P5.

    Family and domain databases

    HAMAPiMF_00391. Ribosomal_L34.
    InterProiIPR000271. Ribosomal_L34.
    IPR020939. Ribosomal_L34_CS.
    [Graphical view]
    PANTHERiPTHR14503. PTHR14503. 1 hit.
    PfamiPF00468. Ribosomal_L34. 1 hit.
    [Graphical view]
    ProDomiPD003101. Ribosomal_L34. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
    PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P0A7P5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKRTFQPSVL KRNRSHGFRA RMATKNGRQV LARRRAKGRA RLTVSK       46
    Length:46
    Mass (Da):5,380
    Last modified:July 21, 1986 - v1
    Checksum:i600916E398939412
    GO

    Mass spectrometryi

    Molecular mass is 5380.5 Da from positions 1 - 46. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J01602 Genomic DNA. Translation: AAB59148.1.
    X01861 Genomic DNA. Translation: CAA25982.1.
    M11056 Genomic DNA. Translation: AAA24566.1.
    L10328 Genomic DNA. Translation: AAA62054.1.
    U00096 Genomic DNA. Translation: AAC76726.1.
    AP009048 Genomic DNA. Translation: BAE77591.1.
    RefSeqiNP_418158.1. NC_000913.3.
    YP_491732.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC76726; AAC76726; b3703.
    BAE77591; BAE77591; BAE77591.
    GeneIDi12930542.
    948216.
    KEGGiecj:Y75_p3470.
    eco:b3703.
    PATRICi32122903. VBIEscCol129921_3827.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J01602 Genomic DNA. Translation: AAB59148.1 .
    X01861 Genomic DNA. Translation: CAA25982.1 .
    M11056 Genomic DNA. Translation: AAA24566.1 .
    L10328 Genomic DNA. Translation: AAA62054.1 .
    U00096 Genomic DNA. Translation: AAC76726.1 .
    AP009048 Genomic DNA. Translation: BAE77591.1 .
    RefSeqi NP_418158.1. NC_000913.3.
    YP_491732.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1VS6 X-ray 3.46 2 1-46 [» ]
    1VS8 X-ray 3.46 2 1-46 [» ]
    1VT2 X-ray 3.30 2 1-46 [» ]
    2AW4 X-ray 3.46 2 1-46 [» ]
    2AWB X-ray 3.46 2 1-46 [» ]
    2I2T X-ray 3.22 2 1-46 [» ]
    2I2V X-ray 3.22 2 1-46 [» ]
    2J28 electron microscopy 8.00 2 1-46 [» ]
    2QAM X-ray 3.21 2 1-46 [» ]
    2QAO X-ray 3.21 2 1-46 [» ]
    2QBA X-ray 3.54 2 1-46 [» ]
    2QBC X-ray 3.54 2 1-46 [» ]
    2QBE X-ray 3.30 2 1-46 [» ]
    2QBG X-ray 3.30 2 1-46 [» ]
    2QBI X-ray 4.00 2 1-46 [» ]
    2QBK X-ray 4.00 2 1-46 [» ]
    2QOV X-ray 3.93 2 1-46 [» ]
    2QOX X-ray 3.93 2 1-46 [» ]
    2QOZ X-ray 3.50 2 1-46 [» ]
    2QP1 X-ray 3.50 2 1-46 [» ]
    2RDO electron microscopy 9.10 2 1-46 [» ]
    2VHM X-ray 3.74 2 1-46 [» ]
    2VHN X-ray 3.74 2 1-46 [» ]
    2WWQ electron microscopy 5.80 6 1-46 [» ]
    2Z4L X-ray 4.45 2 1-46 [» ]
    2Z4N X-ray 4.45 2 1-46 [» ]
    3BBX electron microscopy 10.00 2 1-46 [» ]
    3DF2 X-ray 3.50 2 1-46 [» ]
    3DF4 X-ray 3.50 2 1-46 [» ]
    3E1B electron microscopy - V 1-46 [» ]
    3E1D electron microscopy - V 1-46 [» ]
    3FIK electron microscopy 6.70 2 1-46 [» ]
    3I1N X-ray 3.19 2 1-46 [» ]
    3I1P X-ray 3.19 2 1-46 [» ]
    3I1R X-ray 3.81 2 1-46 [» ]
    3I1T X-ray 3.81 2 1-46 [» ]
    3I20 X-ray 3.71 2 1-46 [» ]
    3I22 X-ray 3.71 2 1-46 [» ]
    3IZT electron microscopy - e 1-46 [» ]
    3IZU electron microscopy - e 1-46 [» ]
    3J01 electron microscopy - 2 1-46 [» ]
    3J0T electron microscopy 12.10 5 1-46 [» ]
    3J0W electron microscopy 14.70 5 1-46 [» ]
    3J0Y electron microscopy 13.50 5 1-46 [» ]
    3J11 electron microscopy 13.10 5 1-46 [» ]
    3J12 electron microscopy 11.50 5 1-46 [» ]
    3J14 electron microscopy 11.50 5 1-46 [» ]
    3J19 electron microscopy 8.30 2 1-46 [» ]
    3J37 electron microscopy 9.80 7 1-46 [» ]
    3J4X electron microscopy 12.00 2 1-46 [» ]
    3J50 electron microscopy 20.00 2 1-46 [» ]
    3J51 electron microscopy 17.00 2 1-46 [» ]
    3J52 electron microscopy 12.00 2 1-46 [» ]
    3J54 electron microscopy 13.00 2 1-46 [» ]
    3J56 electron microscopy 15.00 2 1-46 [» ]
    3J58 electron microscopy 17.00 2 1-46 [» ]
    3J5A electron microscopy 12.00 2 1-46 [» ]
    3J5C electron microscopy 17.00 2 1-46 [» ]
    3J5E electron microscopy 17.00 2 1-46 [» ]
    3J5G electron microscopy 20.00 2 1-46 [» ]
    3J5I electron microscopy 15.00 2 1-46 [» ]
    3J5K electron microscopy 9.00 2 1-46 [» ]
    3J5L electron microscopy 6.60 2 1-46 [» ]
    3J5O electron microscopy 6.80 2 1-46 [» ]
    3J5U electron microscopy 7.60 5 1-46 [» ]
    3J5W electron microscopy 7.60 6 1-46 [» ]
    3KCR electron microscopy - 2 1-46 [» ]
    3OAS X-ray 3.25 2 1-46 [» ]
    3OAT X-ray 3.25 2 1-46 [» ]
    3OFC X-ray 3.19 2 1-46 [» ]
    3OFD X-ray 3.19 2 1-46 [» ]
    3OFQ X-ray 3.10 2 1-46 [» ]
    3OFR X-ray 3.10 2 1-46 [» ]
    3OFZ X-ray 3.29 2 1-46 [» ]
    3OG0 X-ray 3.29 2 1-46 [» ]
    3ORB X-ray 3.30 2 1-46 [» ]
    3R8S X-ray 3.00 2 1-46 [» ]
    3R8T X-ray 3.00 2 1-46 [» ]
    3SGF X-ray 3.20 6 1-46 [» ]
    3UOS X-ray 3.70 6 1-46 [» ]
    4CSU electron microscopy 5.50 6 1-46 [» ]
    4GAR X-ray 3.30 2 1-46 [» ]
    4GAU X-ray 3.30 2 1-46 [» ]
    4KIX X-ray 2.90 2 1-46 [» ]
    4KIZ X-ray 2.90 2 1-46 [» ]
    4KJ1 X-ray 2.90 2 1-46 [» ]
    4KJ3 X-ray 2.90 2 1-46 [» ]
    4KJ5 X-ray 2.90 2 1-46 [» ]
    4KJ7 X-ray 2.90 2 1-46 [» ]
    4KJ9 X-ray 2.90 2 1-46 [» ]
    4KJB X-ray 2.90 2 1-46 [» ]
    ProteinModelPortali P0A7P5.
    SMRi P0A7P5. Positions 3-43.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-581N.
    IntActi P0A7P5. 3 interactions.
    STRINGi 511145.b3703.

    Chemistry

    ChEMBLi CHEMBL2363135.

    Proteomic databases

    PaxDbi P0A7P5.
    PRIDEi P0A7P5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC76726 ; AAC76726 ; b3703 .
    BAE77591 ; BAE77591 ; BAE77591 .
    GeneIDi 12930542.
    948216.
    KEGGi ecj:Y75_p3470.
    eco:b3703.
    PATRICi 32122903. VBIEscCol129921_3827.

    Organism-specific databases

    EchoBASEi EB0885.
    EcoGenei EG10892. rpmH.

    Phylogenomic databases

    eggNOGi COG0230.
    HOGENOMi HOG000111572.
    KOi K02914.
    OrthoDBi EOG6DZF71.
    PhylomeDBi P0A7P5.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG10892-MONOMER.
    ECOL316407:JW3680-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P0A7P5.
    PROi P0A7P5.

    Gene expression databases

    Genevestigatori P0A7P5.

    Family and domain databases

    HAMAPi MF_00391. Ribosomal_L34.
    InterProi IPR000271. Ribosomal_L34.
    IPR020939. Ribosomal_L34_CS.
    [Graphical view ]
    PANTHERi PTHR14503. PTHR14503. 1 hit.
    Pfami PF00468. Ribosomal_L34. 1 hit.
    [Graphical view ]
    ProDomi PD003101. Ribosomal_L34. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    TIGRFAMsi TIGR01030. rpmH_bact. 1 hit.
    PROSITEi PS00784. RIBOSOMAL_L34. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The sequence determination of a protein in a micro scale: the sequence analysis of ribosomal protein L34 of Escherichia coli."
      Chen R.
      Hoppe-Seyler's Z. Physiol. Chem. 357:873-886(1976) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE.
      Strain: K12.
    2. "The nucleotide sequence of the dnaA gene promoter and of the adjacent rpmH gene, coding for the ribosomal protein L34, of Escherichia coli."
      Hansen F.G., Hansen E.B., Atlung T.
      EMBO J. 1:1043-1048(1982) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    3. "Physical mapping and nucleotide sequence of the rnpA gene that encodes the protein component of ribonuclease P in Escherichia coli."
      Hansen F.G., Hansen E.B., Atlung T.
      Gene 38:85-93(1985) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: K12.
    4. "DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication."
      Burland V.D., Plunkett G. III, Daniels D.L., Blattner F.R.
      Genomics 16:551-561(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    6. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    7. "Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry."
      Arnold R.J., Reilly J.P.
      Anal. Biochem. 269:105-112(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
      Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
    8. Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES.
      Strain: MRE-600.

    Entry informationi

    Entry nameiRL34_ECOLI
    AccessioniPrimary (citable) accession number: P0A7P5
    Secondary accession number(s): P02437, Q2M815
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 21, 1986
    Last sequence update: July 21, 1986
    Last modified: October 1, 2014
    This is version 87 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. Ribosomal proteins
      Ribosomal proteins families and list of entries
    4. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3