SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P0A7L8

- RL27_ECOLI

UniProt

P0A7L8 - RL27_ECOLI

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
50S ribosomal protein L27
Gene
rpmA, b3185, JW3152
Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. protein binding Source: IntAct
  2. rRNA binding Source: UniProtKB-KW
  3. structural constituent of ribosome Source: InterPro
  4. tRNA binding Source: UniProtKB-KW

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG50002-MONOMER.
ECOL316407:JW3152-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27
Gene namesi
Name:rpmA
Ordered Locus Names:b3185, JW3152
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG50002. rpmA.

Subcellular locationi

GO - Cellular componenti

  1. cytosolic large ribosomal subunit Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 858450S ribosomal protein L27UniRule annotation
PRO_0000181085Add
BLAST

Proteomic databases

PaxDbiP0A7L8.
PRIDEiP0A7L8.

Expressioni

Gene expression databases

GenevestigatoriP0A7L8.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit, cross-links to the 23S rRNA. Cross-links to the A and P site tRNAs.

Binary interactionsi

WithEntry#Exp.IntActNotes
mqsAQ468642EBI-546875,EBI-1120353

Protein-protein interaction databases

BioGridi849576. 1 interaction.
DIPiDIP-47933N.
IntActiP0A7L8. 26 interactions.
MINTiMINT-1317488.
STRINGi511145.b3185.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi22 – 254
Beta strandi36 – 394
Beta strandi41 – 444
Beta strandi48 – 514
Beta strandi60 – 678
Beta strandi68 – 725
Beta strandi73 – 764
Beta strandi77 – 815
Beta strandi82 – 843

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1P85electron microscopy12.30U2-85[»]
1P86electron microscopy11.50U2-85[»]
1VS6X-ray3.46W1-85[»]
1VS8X-ray3.46W1-85[»]
1VT2X-ray3.30W1-85[»]
2AW4X-ray3.46W2-85[»]
2AWBX-ray3.46W2-85[»]
2GYAelectron microscopy15.00U2-85[»]
2GYCelectron microscopy15.00U2-85[»]
2I2TX-ray3.22W2-85[»]
2I2VX-ray3.22W2-85[»]
2J28electron microscopy8.00W2-85[»]
2QAMX-ray3.21W2-85[»]
2QAOX-ray3.21W2-85[»]
2QBAX-ray3.54W2-85[»]
2QBCX-ray3.54W2-85[»]
2QBEX-ray3.30W2-85[»]
2QBGX-ray3.30W2-85[»]
2QBIX-ray4.00W2-85[»]
2QBKX-ray4.00W2-85[»]
2QOVX-ray3.93W2-85[»]
2QOXX-ray3.93W2-85[»]
2QOZX-ray3.50W2-85[»]
2QP1X-ray3.50W2-85[»]
2RDOelectron microscopy9.10W2-85[»]
2VHMX-ray3.74W2-85[»]
2VHNX-ray3.74W2-85[»]
2WWQelectron microscopy5.80Y7-85[»]
2Z4LX-ray4.45W2-85[»]
2Z4NX-ray4.45W2-85[»]
3BBXelectron microscopy10.00W2-85[»]
3DF2X-ray3.50W2-84[»]
3DF4X-ray3.50W2-84[»]
3E1Belectron microscopy-P1-85[»]
3E1Delectron microscopy-P1-85[»]
3FIKelectron microscopy6.70W7-85[»]
3I1NX-ray3.19W1-85[»]
3I1PX-ray3.19W1-85[»]
3I1RX-ray3.81W1-85[»]
3I1TX-ray3.81W1-85[»]
3I20X-ray3.71W1-85[»]
3I22X-ray3.71W1-85[»]
3IZTelectron microscopy-X1-85[»]
3IZUelectron microscopy-X1-85[»]
3J01electron microscopy-W2-85[»]
3J0Telectron microscopy12.10Y2-85[»]
3J0Welectron microscopy14.70Y2-85[»]
3J0Yelectron microscopy13.50Y2-85[»]
3J11electron microscopy13.10Y2-85[»]
3J12electron microscopy11.50Y2-85[»]
3J14electron microscopy11.50Y2-85[»]
3J19electron microscopy8.30W10-85[»]
3J37electron microscopy9.8002-85[»]
3J4Xelectron microscopy12.00W7-85[»]
3J50electron microscopy20.00W7-85[»]
3J51electron microscopy17.00W7-85[»]
3J52electron microscopy12.00W7-85[»]
3J54electron microscopy13.00W7-85[»]
3J56electron microscopy15.00W7-85[»]
3J58electron microscopy17.00W7-85[»]
3J5Aelectron microscopy12.00W7-85[»]
3J5Celectron microscopy17.00W7-85[»]
3J5Eelectron microscopy17.00W7-85[»]
3J5Gelectron microscopy20.00W7-85[»]
3J5Ielectron microscopy15.00W7-85[»]
3J5Kelectron microscopy9.00W7-85[»]
3J5Lelectron microscopy6.60W7-85[»]
3J5Oelectron microscopy6.80W1-85[»]
3J5Uelectron microscopy7.60Y2-85[»]
3J5Welectron microscopy7.60Z2-85[»]
3KCRelectron microscopy-W1-85[»]
3OASX-ray3.25W7-85[»]
3OATX-ray3.25W7-85[»]
3OFCX-ray3.19W7-85[»]
3OFDX-ray3.19W7-85[»]
3OFQX-ray3.10W7-85[»]
3OFRX-ray3.10W7-85[»]
3OFZX-ray3.29W7-85[»]
3OG0X-ray3.29W7-85[»]
3ORBX-ray3.30W1-85[»]
3R8SX-ray3.00W10-85[»]
3R8TX-ray3.00W11-85[»]
3SGFX-ray3.2001-85[»]
3UOSX-ray3.7001-85[»]
4CSUelectron microscopy5.50Y2-85[»]
4GARX-ray3.30W1-85[»]
4GAUX-ray3.30W1-85[»]
4KIXX-ray2.90W1-85[»]
4KIZX-ray2.90W1-85[»]
4KJ1X-ray2.90W1-85[»]
4KJ3X-ray2.90W1-85[»]
4KJ5X-ray2.90W1-85[»]
4KJ7X-ray2.90W1-85[»]
4KJ9X-ray2.90W1-85[»]
4KJBX-ray2.90W1-85[»]
DisProtiDP00140.
ProteinModelPortaliP0A7L8.
SMRiP0A7L8. Positions 2-85.

Miscellaneous databases

EvolutionaryTraceiP0A7L8.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0211.
HOGENOMiHOG000111610.
KOiK02899.
OMAiKGPLNRK.
OrthoDBiEOG6N94H6.
PhylomeDBiP0A7L8.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0A7L8-1 [UniParc]FASTAAdd to Basket

« Hide

MAHKKAGGST RNGRDSEAKR LGVKRFGGES VLAGSIIVRQ RGTKFHAGAN   50
VGCGRDHTLF AKADGKVKFE VKGPKNRKFI SIEAE 85
Length:85
Mass (Da):9,124
Last modified:January 23, 2007 - v2
Checksum:iB43AAE180ABC23EA
GO

Mass spectrometryi

Molecular mass is 8993.5 Da from positions 2 - 85. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D13267 Genomic DNA. Translation: BAA02526.1.
U18997 Genomic DNA. Translation: AAA57986.1.
U00096 Genomic DNA. Translation: AAC76217.1.
AP009048 Genomic DNA. Translation: BAE77229.1.
PIRiJS0767. R5EC27.
RefSeqiNP_417652.1. NC_000913.3.
YP_491370.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC76217; AAC76217; b3185.
BAE77229; BAE77229; BAE77229.
GeneIDi12932199.
945190.
KEGGiecj:Y75_p3105.
eco:b3185.
PATRICi32121790. VBIEscCol129921_3279.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D13267 Genomic DNA. Translation: BAA02526.1 .
U18997 Genomic DNA. Translation: AAA57986.1 .
U00096 Genomic DNA. Translation: AAC76217.1 .
AP009048 Genomic DNA. Translation: BAE77229.1 .
PIRi JS0767. R5EC27.
RefSeqi NP_417652.1. NC_000913.3.
YP_491370.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1P85 electron microscopy 12.30 U 2-85 [» ]
1P86 electron microscopy 11.50 U 2-85 [» ]
1VS6 X-ray 3.46 W 1-85 [» ]
1VS8 X-ray 3.46 W 1-85 [» ]
1VT2 X-ray 3.30 W 1-85 [» ]
2AW4 X-ray 3.46 W 2-85 [» ]
2AWB X-ray 3.46 W 2-85 [» ]
2GYA electron microscopy 15.00 U 2-85 [» ]
2GYC electron microscopy 15.00 U 2-85 [» ]
2I2T X-ray 3.22 W 2-85 [» ]
2I2V X-ray 3.22 W 2-85 [» ]
2J28 electron microscopy 8.00 W 2-85 [» ]
2QAM X-ray 3.21 W 2-85 [» ]
2QAO X-ray 3.21 W 2-85 [» ]
2QBA X-ray 3.54 W 2-85 [» ]
2QBC X-ray 3.54 W 2-85 [» ]
2QBE X-ray 3.30 W 2-85 [» ]
2QBG X-ray 3.30 W 2-85 [» ]
2QBI X-ray 4.00 W 2-85 [» ]
2QBK X-ray 4.00 W 2-85 [» ]
2QOV X-ray 3.93 W 2-85 [» ]
2QOX X-ray 3.93 W 2-85 [» ]
2QOZ X-ray 3.50 W 2-85 [» ]
2QP1 X-ray 3.50 W 2-85 [» ]
2RDO electron microscopy 9.10 W 2-85 [» ]
2VHM X-ray 3.74 W 2-85 [» ]
2VHN X-ray 3.74 W 2-85 [» ]
2WWQ electron microscopy 5.80 Y 7-85 [» ]
2Z4L X-ray 4.45 W 2-85 [» ]
2Z4N X-ray 4.45 W 2-85 [» ]
3BBX electron microscopy 10.00 W 2-85 [» ]
3DF2 X-ray 3.50 W 2-84 [» ]
3DF4 X-ray 3.50 W 2-84 [» ]
3E1B electron microscopy - P 1-85 [» ]
3E1D electron microscopy - P 1-85 [» ]
3FIK electron microscopy 6.70 W 7-85 [» ]
3I1N X-ray 3.19 W 1-85 [» ]
3I1P X-ray 3.19 W 1-85 [» ]
3I1R X-ray 3.81 W 1-85 [» ]
3I1T X-ray 3.81 W 1-85 [» ]
3I20 X-ray 3.71 W 1-85 [» ]
3I22 X-ray 3.71 W 1-85 [» ]
3IZT electron microscopy - X 1-85 [» ]
3IZU electron microscopy - X 1-85 [» ]
3J01 electron microscopy - W 2-85 [» ]
3J0T electron microscopy 12.10 Y 2-85 [» ]
3J0W electron microscopy 14.70 Y 2-85 [» ]
3J0Y electron microscopy 13.50 Y 2-85 [» ]
3J11 electron microscopy 13.10 Y 2-85 [» ]
3J12 electron microscopy 11.50 Y 2-85 [» ]
3J14 electron microscopy 11.50 Y 2-85 [» ]
3J19 electron microscopy 8.30 W 10-85 [» ]
3J37 electron microscopy 9.80 0 2-85 [» ]
3J4X electron microscopy 12.00 W 7-85 [» ]
3J50 electron microscopy 20.00 W 7-85 [» ]
3J51 electron microscopy 17.00 W 7-85 [» ]
3J52 electron microscopy 12.00 W 7-85 [» ]
3J54 electron microscopy 13.00 W 7-85 [» ]
3J56 electron microscopy 15.00 W 7-85 [» ]
3J58 electron microscopy 17.00 W 7-85 [» ]
3J5A electron microscopy 12.00 W 7-85 [» ]
3J5C electron microscopy 17.00 W 7-85 [» ]
3J5E electron microscopy 17.00 W 7-85 [» ]
3J5G electron microscopy 20.00 W 7-85 [» ]
3J5I electron microscopy 15.00 W 7-85 [» ]
3J5K electron microscopy 9.00 W 7-85 [» ]
3J5L electron microscopy 6.60 W 7-85 [» ]
3J5O electron microscopy 6.80 W 1-85 [» ]
3J5U electron microscopy 7.60 Y 2-85 [» ]
3J5W electron microscopy 7.60 Z 2-85 [» ]
3KCR electron microscopy - W 1-85 [» ]
3OAS X-ray 3.25 W 7-85 [» ]
3OAT X-ray 3.25 W 7-85 [» ]
3OFC X-ray 3.19 W 7-85 [» ]
3OFD X-ray 3.19 W 7-85 [» ]
3OFQ X-ray 3.10 W 7-85 [» ]
3OFR X-ray 3.10 W 7-85 [» ]
3OFZ X-ray 3.29 W 7-85 [» ]
3OG0 X-ray 3.29 W 7-85 [» ]
3ORB X-ray 3.30 W 1-85 [» ]
3R8S X-ray 3.00 W 10-85 [» ]
3R8T X-ray 3.00 W 11-85 [» ]
3SGF X-ray 3.20 0 1-85 [» ]
3UOS X-ray 3.70 0 1-85 [» ]
4CSU electron microscopy 5.50 Y 2-85 [» ]
4GAR X-ray 3.30 W 1-85 [» ]
4GAU X-ray 3.30 W 1-85 [» ]
4KIX X-ray 2.90 W 1-85 [» ]
4KIZ X-ray 2.90 W 1-85 [» ]
4KJ1 X-ray 2.90 W 1-85 [» ]
4KJ3 X-ray 2.90 W 1-85 [» ]
4KJ5 X-ray 2.90 W 1-85 [» ]
4KJ7 X-ray 2.90 W 1-85 [» ]
4KJ9 X-ray 2.90 W 1-85 [» ]
4KJB X-ray 2.90 W 1-85 [» ]
DisProti DP00140.
ProteinModelPortali P0A7L8.
SMRi P0A7L8. Positions 2-85.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 849576. 1 interaction.
DIPi DIP-47933N.
IntActi P0A7L8. 26 interactions.
MINTi MINT-1317488.
STRINGi 511145.b3185.

Chemistry

ChEMBLi CHEMBL2363135.

Proteomic databases

PaxDbi P0A7L8.
PRIDEi P0A7L8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC76217 ; AAC76217 ; b3185 .
BAE77229 ; BAE77229 ; BAE77229 .
GeneIDi 12932199.
945190.
KEGGi ecj:Y75_p3105.
eco:b3185.
PATRICi 32121790. VBIEscCol129921_3279.

Organism-specific databases

EchoBASEi EB4296.
EcoGenei EG50002. rpmA.

Phylogenomic databases

eggNOGi COG0211.
HOGENOMi HOG000111610.
KOi K02899.
OMAi KGPLNRK.
OrthoDBi EOG6N94H6.
PhylomeDBi P0A7L8.

Enzyme and pathway databases

BioCyci EcoCyc:EG50002-MONOMER.
ECOL316407:JW3152-MONOMER.

Miscellaneous databases

EvolutionaryTracei P0A7L8.
PROi P0A7L8.

Gene expression databases

Genevestigatori P0A7L8.

Family and domain databases

HAMAPi MF_00539. Ribosomal_L27.
InterProi IPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view ]
PANTHERi PTHR15893. PTHR15893. 1 hit.
Pfami PF01016. Ribosomal_L27. 1 hit.
[Graphical view ]
PRINTSi PR00063. RIBOSOMALL27.
ProDomi PD003114. Ribosomal_L27. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
TIGRFAMsi TIGR00062. L27. 1 hit.
PROSITEi PS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and nucleotide sequencing of the genes, rpIU and rpmA, for ribosomal proteins L21 and L27 of Escherichia coli."
    Jeong J.H., Kitakawa M.S., Isono S., Isono K.
    DNA Seq. 4:59-67(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "The primary structure of protein L27 from the peptidyl-tRNA binding site of Escherichia coli ribosomes."
    Chen R., Mende L., Arfsten U.
    FEBS Lett. 59:96-99(1975) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-85.
    Strain: K12.
  5. "Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies."
    Urlaub H., Kruft V., Bischof O., Mueller E.-C., Wittmann-Liebold B.
    EMBO J. 14:4578-4588(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 67-78, CROSS-LINKING TO RRNA.
    Strain: MRE-600.
  6. "The use of 2-iminothiolane as an RNA-protein cross-linking agent in Escherichia coli ribosomes, and the localisation on 23S RNA of sites cross-linked to proteins L4, L6, L21, L23, L27 and L29."
    Wower I., Wower J., Meinke M., Brimacombe R.
    Nucleic Acids Res. 9:4285-4302(1981) [PubMed] [Europe PMC] [Abstract]
    Cited for: CROSS-LINKING TO 23S RRNA.
    Strain: MRE-600.
  7. "The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site."
    Osswald M., Doering T., Brimacombe R.
    Nucleic Acids Res. 23:4635-4641(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: CROSS-LINKING TO THE TRNA CENTRAL FOLD.
    Strain: MRE-600.
  8. "Escherichia coli proteome analysis using the gene-protein database."
    VanBogelen R.A., Abshire K.Z., Moldover B., Olson E.R., Neidhardt F.C.
    Electrophoresis 18:1243-1251(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY 2D-GEL.
  9. "Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry."
    Arnold R.J., Reilly J.P.
    Anal. Biochem. 269:105-112(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
    Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
  10. "Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement."
    Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., Chapman M.S., Frank J.
    Cell 113:789-801(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (11.50 ANGSTROMS).
    Strain: MRE-600.
  11. Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES.
    Strain: MRE-600.

Entry informationi

Entry nameiRL27_ECOLI
AccessioniPrimary (citable) accession number: P0A7L8
Secondary accession number(s): P02427, Q2M927
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi