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Protein

Insertion element IS136 uncharacterized protein Atu4601

Gene

Atu4601

Organism
Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Insertion element IS136 uncharacterized protein Atu4601
Gene namesi
Ordered Locus Names:Atu4601
ORF Names:AGR_L_551
OrganismiAgrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Taxonomic identifieri176299 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
Proteomesi
  • UP000000813 Componenti: Chromosome linear

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000755151 – 195Insertion element IS136 uncharacterized protein Atu4601Add BLAST195

Interactioni

Protein-protein interaction databases

STRINGi176299.Atu4601.

Structurei

3D structure databases

ProteinModelPortaliP0A3L3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 194Integrase catalyticPROSITE-ProRule annotationAdd BLAST170

Sequence similaritiesi

Contains 1 integrase catalytic domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108MVM. Bacteria.
ENOG410Z4Y8. LUCA.
HOGENOMiHOG000118817.
OMAiHTRSFAR.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00665. rve. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A3L3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNHAMLLEK HTAVRKGRLH DGKVMVMRSN LRWCSDGLEF ACWNGEVIRL
60 70 80 90 100
AFIIDAFDRE IIAWTAVANA GISGSDVRDM MLEAVEKRFH ATRAPHAIEH
110 120 130 140 150
LSDNGSAYTA RDTRLFAQAL NLTPCFTPVA SPQSNGMSEA FVKTLKRDYI
160 170 180 190
RISALPDAQT ALRLIDGWIE DYNEIHPHSA LKMASPRQFI RAKSI
Length:195
Mass (Da):21,864
Last modified:March 15, 2005 - v1
Checksum:i37E0C9AD3BCF74FA
GO

Sequence cautioni

The sequence AAK88844 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007870 Genomic DNA. Translation: AAK88844.1. Different initiation.
RefSeqiNP_356059.1. NC_003063.2.

Genome annotation databases

EnsemblBacteriaiAAK88844; AAK88844; Atu4601.
GeneIDi1136475.
KEGGiatu:Atu4601.
PATRICi20818626. VBIAgrTum91616_4408.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE007870 Genomic DNA. Translation: AAK88844.1. Different initiation.
RefSeqiNP_356059.1. NC_003063.2.

3D structure databases

ProteinModelPortaliP0A3L3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi176299.Atu4601.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK88844; AAK88844; Atu4601.
GeneIDi1136475.
KEGGiatu:Atu4601.
PATRICi20818626. VBIAgrTum91616_4408.

Phylogenomic databases

eggNOGiENOG4108MVM. Bacteria.
ENOG410Z4Y8. LUCA.
HOGENOMiHOG000118817.
OMAiHTRSFAR.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00665. rve. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY4601_AGRFC
AccessioniPrimary (citable) accession number: P0A3L3
Secondary accession number(s): P05681
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2005
Last sequence update: March 15, 2005
Last modified: September 7, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome, Transposable element

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.