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Protein

Carbon dioxide-concentrating mechanism protein CcmK

Gene

ccmK

Organism
Synechococcus sp. (strain WH8102)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.

Names & Taxonomyi

Protein namesi
Recommended name:
Carbon dioxide-concentrating mechanism protein CcmK
Alternative name(s):
Carboxysome shell protein CsoS1
Gene namesi
Name:ccmK
Synonyms:csoS1
Ordered Locus Names:SYNW1719
OrganismiSynechococcus sp. (strain WH8102)
Taxonomic identifieri84588 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001422 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 103103Carbon dioxide-concentrating mechanism protein CcmKPRO_0000201504Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi84588.SYNW1719.

Structurei

3D structure databases

SMRiP0A329. Positions 7-93.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000286836.
OMAiPHSEVEL.
OrthoDBiEOG6ZH2H4.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
SMARTiSM00877. BMC. 1 hit.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A329-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANETMGIAL GMIETRGLVP AIEAADAMTK AAEVRLIGRE FVGGGYVTVL
60 70 80 90 100
VRGETGAVNA AVRAGADACE RVGDGLVAAH IIARPHREVE PALGNGNFLG

QKD
Length:103
Mass (Da):10,584
Last modified:March 14, 2005 - v1
Checksum:iBFBF578AB15734E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX569693 Genomic DNA. Translation: CAE08234.1.
RefSeqiNP_897810.1. NC_005070.1.

Genome annotation databases

KEGGisyw:SYNW1719.
PATRICi23835113. VBISynSp27240_1851.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX569693 Genomic DNA. Translation: CAE08234.1.
RefSeqiNP_897810.1. NC_005070.1.

3D structure databases

SMRiP0A329. Positions 7-93.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi84588.SYNW1719.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGisyw:SYNW1719.
PATRICi23835113. VBISynSp27240_1851.

Phylogenomic databases

eggNOGiCOG4577.
HOGENOMiHOG000286836.
OMAiPHSEVEL.
OrthoDBiEOG6ZH2H4.

Family and domain databases

InterProiIPR020808. Bact_microcomp_CS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
SMARTiSM00877. BMC. 1 hit.
[Graphical view]
PROSITEiPS01139. BACT_MICROCOMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WH8102.

Entry informationi

Entry nameiCCMK_SYNPX
AccessioniPrimary (citable) accession number: P0A329
Secondary accession number(s): P96485
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 14, 2005
Last sequence update: March 14, 2005
Last modified: March 31, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.