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Protein

Propanediol utilization protein PduU

Gene

pduU

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. ethanolamine metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSENT99287:GCTI-2067-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Propanediol utilization protein PduU
Gene namesi
Name:pduU
Ordered Locus Names:STM2055
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
ProteomesiUP000001014: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 116116Propanediol utilization protein PduUPRO_0000201526Add
BLAST

Proteomic databases

PaxDbiP0A1D1.
PRIDEiP0A1D1.

Expressioni

Inductioni

By propanediol.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM2055.

Structurei

Secondary structure

1
116
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi9 – 146Combined sources
Beta strandi19 – 2810Combined sources
Helixi31 – 366Combined sources
Beta strandi45 – 539Combined sources
Helixi56 – 6611Combined sources
Beta strandi67 – 7610Combined sources
Turni77 – 804Combined sources
Beta strandi81 – 866Combined sources
Helixi88 – 10619Combined sources
Beta strandi114 – 1163Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3CGIX-ray1.80A/B/C/D1-116[»]
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0A1D1.

Family & Domainsi

Sequence similaritiesi

Belongs to the EutS/PduU family.Curated

Phylogenomic databases

eggNOGiCOG4810.
HOGENOMiHOG000286280.
KOiK04031.
OMAiHVIASPI.
OrthoDBiEOG651T2V.
PhylomeDBiP0A1D1.

Family and domain databases

InterProiIPR009307. EutS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
PIRSFiPIRSF012296. EutS_PduU. 1 hit.
SMARTiSM00877. BMC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0A1D1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERQPTTDRM IQEYVPGKQV TLAHLIANPG KDLFKKLGLQ DAVSAIGILT
60 70 80 90 100
ITPSEASIIA CDIATKSGAV EIGFLDRFTG AVVLTGDVSA VEYALKQVTR
110
TLGEMMQFTT CSITRT
Length:116
Mass (Da):12,476
Last modified:March 1, 2005 - v1
Checksum:i39BEFE5E38F0D1F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026270 Genomic DNA. Translation: AAD39019.1.
AE006468 Genomic DNA. Translation: AAL20959.1.
RefSeqiNP_461000.1. NC_003197.1.

Genome annotation databases

EnsemblBacteriaiAAL20959; AAL20959; STM2055.
GeneIDi1253576.
KEGGistm:STM2055.
PATRICi32382693. VBISalEnt20916_2177.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF026270 Genomic DNA. Translation: AAD39019.1.
AE006468 Genomic DNA. Translation: AAL20959.1.
RefSeqiNP_461000.1. NC_003197.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3CGIX-ray1.80A/B/C/D1-116[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM2055.

Proteomic databases

PaxDbiP0A1D1.
PRIDEiP0A1D1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL20959; AAL20959; STM2055.
GeneIDi1253576.
KEGGistm:STM2055.
PATRICi32382693. VBISalEnt20916_2177.

Phylogenomic databases

eggNOGiCOG4810.
HOGENOMiHOG000286280.
KOiK04031.
OMAiHVIASPI.
OrthoDBiEOG651T2V.
PhylomeDBiP0A1D1.

Enzyme and pathway databases

BioCyciSENT99287:GCTI-2067-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0A1D1.

Family and domain databases

InterProiIPR009307. EutS.
IPR000249. Microcompartment_bac.
[Graphical view]
PfamiPF00936. BMC. 1 hit.
[Graphical view]
PIRSFiPIRSF012296. EutS_PduU. 1 hit.
SMARTiSM00877. BMC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The propanediol utilization (pdu) operon of Salmonella enterica serovar typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation."
    Bobik T.A., Havemann G.D., Busch R.J., Williams D.S., Aldrich H.C.
    J. Bacteriol. 181:5967-5975(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: LT2.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LT2 / SGSC1412 / ATCC 700720.

Entry informationi

Entry nameiPDUU_SALTY
AccessioniPrimary (citable) accession number: P0A1D1
Secondary accession number(s): Q9XDM7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: March 1, 2005
Last modified: January 7, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.